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  1. Rodriguez Carnero, Luis Antonio; Kuramoto, Andréia; Campos de Oliveira, Léa; Monteiro, Jhonatas Sirino; Setubal, João Carlos; Cunha-Neto, Edécio; Cerdeira Sabino, Ester; Giordano, Ricardo José

    Anti-Trypanosoma cruzi antibody profiling in patients with Chagas disease treated with benznidazole assessed by genome phage display

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    Public Library of Science (PLoS), 2023

    Published in: PLOS Neglected Tropical Diseases

  2. Carrau, Analía; Tano, Josefina; Moyano, Laura; Ripa, María Belén; Petrocelli, Silvana; Piskulic, Laura; Moreira, Leandro Marcio; Patané, José Salvatore Leister; Setubal, João Carlos; Orellano, Elena Graciela

    A novel BLUF photoreceptor modulates the Xanthomonas citri subsp. citri–host plant interaction

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    Springer Science and Business Media LLC, 2023

    Published in: Photochemical & Photobiological Sciences

  3. Marquioni, Vinícius; Rossi, Fernando Pacheco Nobre; Mendonça, Deborah Cezar; Martins, Layla Farage; Behlau, Franklin; Setubal, João Carlos; da Silva, Aline Maria; Novo-Mansur, Maria Teresa Marques

    Isolation and characterization of vB_XciM_LucasX, a new jumbo phage that infects Xanthomonas citri and Xanthomonas fuscans

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    Public Library of Science (PLoS), 2022

    Published in: PLOS ONE

  4. Braga, Lucas Palma Perez; Pereira, Roberta Verciano; Martins, Layla Farage; Moura, Livia Maria Silva; Sanchez, Fabio Beltrame; Patané, José Salvatore Leister; da Silva, Aline Maria; Setubal, João Carlos

    Genome-resolved metagenome and metatranscriptome analyses of thermophilic composting reveal key bacterial players and their metabolic interactions

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    Springer Science and Business Media LLC, 2021

    Published in: BMC Genomics

  5. Girardello, Raquel; Piroupo, Carlos Morais; Martins, Joaquim; Maffucci, Marcia Helena; Cury, Ana Paula; Franco, Maria Renata Gomes; Malta, Fernanda de Mello; Rocha, Natália Conceição; Pinho, João Renato Rebello; Rossi, Flavia; Duarte, Alberto José da Silva; Setubal, João Carlos

    Genomic Characterization of mcr-1.1-Producing Escherichia coli Recovered From Human Infections in São Paulo, Brazil

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    Frontiers Media SA, 2021

    Published in: Frontiers in Microbiology

  6. Butarelli, Ana Carolina de Araújo; Ferreira, Lucas Salomão de Sousa; Riyuzo, Raquel; Dall’Agnol, Hivana Melo Barbosa; Piroupo, Carlos Morais; da Silva, Aline Maria; Setubal, João Carlos; Dall’Agnol, Leonardo Teixeira

    Diversity assessment of photosynthesizers: comparative analysis of pre-cultivated and natural microbiome of sediments from Cerrado biome in Maranhão, Brazil

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    Springer Science and Business Media LLC, 2022

    Published in: Environmental Science and Pollution Research

  7. Braga, Stefania Pegorin; dos Santos, Alexandre Paes; Paganini, Thais; Barbosa, Deibs; Epamino, George Willian Condomitti; Morais, Carlos; Martins, Layla Farage; Silva, Aline Maria; Setubal, João Carlos; Vallim, Marcelo Afonso; Pascon, Renata Castiglioni

    First report of cis-1,4-polyisoprene degradation by Gordonia paraffinivorans

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    Springer Science and Business Media LLC, 2019

    Published in: Brazilian Journal of Microbiology

  8. Ladin, Zachary S.; Ferrell, Barbra; Dums, Jacob T.; Moore, Ryan M.; Levia, Delphis F.; Shriver, W. Gregory; D’Amico, Vincent; Trammell, Tara L. E.; Setubal, João Carlos; Wommack, K. Eric

    Assessing the efficacy of eDNA metabarcoding for measuring microbial biodiversity within forest ecosystems

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    Springer Science and Business Media LLC, 2021

    Published in: Scientific Reports

  9. Assis, Renata A.B.; Varani, Alessandro M.; Sagawa, Cintia H.D.; Patané, José S.L.; Setubal, João Carlos; Uceda-Campos, Guillermo; da Silva, Aline Maria; Zaini, Paulo A.; Almeida, Nalvo F.; Moreira, Leandro Marcio; Dandekar, Abhaya M.

    A comparative genomic analysis of Xanthomonas arboricola pv. juglandis strains reveal hallmarks of mobile genetic elements in the adaptation and accelerated evolution of virulence

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    Elsevier BV, 2021

    Published in: Genomics

  10. Rodriguez Carnero, Luis Antonio; Reis Teixeira, André Azevedo; Fen Tang, Fenny Hui; Kuramoto, Andréia; Manso Alves, Maria Júlia; Colli, Walter; Setubal, João Carlos; Cunha-Neto, Edécio; Pasqualini, Renata; Arap, Wadih; Giordano, Ricardo José

    Protocol for design, construction, and selection of genome phage (gPhage) display libraries

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    Elsevier BV, 2021

    Published in: STAR Protocols

  11. Moraes, Lauro Ângelo Gonçalves de; Felestrino, Érica Barbosa; Assis, Renata de Almeida Barbosa; Matos, Diogo; Lima, Joubert de Castro; Lima, Leandro de Araújo; Almeida, Nalvo Franco; Setubal, João Carlos; Garcia, Camila Carrião Machado; Moreira, Leandro Marcio

    TabPath: interactive tables for metabolic pathway analysis

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    Oxford University Press (OUP), 2018

    Published in: Bioinformatics

  12. Amgarten, Deyvid; Martins, Layla Farage; Lombardi, Karen Cristina; Antunes, Luciana Principal; de Souza, Ana Paula Silva; Nicastro, Gianlucca Gonçalves; Kitajima, Elliott Watanabe; Quaggio, Ronaldo Bento; Upton, Chris; Setubal, João Carlos; da Silva, Aline Maria

    Three novel Pseudomonas phages isolated from composting provide insights into the evolution and diversity of tailed phages

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    Springer Science and Business Media LLC, 2017

    Published in: BMC Genomics

  13. Thomas, Andrew Maltez; Gleber-Netto, Frederico Omar; Fernandes, Gustavo Ribeiro; Amorim, Maria; Barbosa, Luisa Fernanda; Francisco, Ana Luisa Noronha; Guerra de Andrade, Arthur; Setubal, João Carlos; Kowalski, Luiz Paulo; Nunes, Diana Noronha; Dias-Neto, Emmanuel

    Alcohol and tobacco consumption affects bacterial richness in oral cavity mucosa biofilms

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    Springer Science and Business Media LLC, 2014

    Published in: BMC Microbiology

  14. Nascimento, Fernanda Sayuri do; Suzuki, Milena Oliveira; Taba, João Victor; de Mattos, Vitoria Carneiro; Pipek, Leonardo Zumerkorn; D’Albuquerque, Eugênia Machado Carneiro; Iuamoto, Leandro; Meyer, Alberto; Andraus, Wellington; Pinho, João Renato Rebello; de Moura, Eduardo Guimarães Hourneaux; Setubal, João Carlos; Carneiro-D’Albuquerque, Luiz Augusto

    Analysis of biliary MICRObiota in hepatoBILIOpancreatic diseases compared to healthy people [MICROBILIO]: Study protocol

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    Public Library of Science (PLoS), 2020

    Published in: PLOS ONE

  15. Antunes, Luciana Principal; Martins, Layla Farage; Pereira, Roberta Verciano; Thomas, Andrew Maltez; Barbosa, Deibs; Lemos, Leandro Nascimento; Silva, Gianluca Major Machado; Moura, Livia Maria Silva; Epamino, George Willian Condomitti; Digiampietri, Luciano Antonio; Lombardi, Karen Cristina; Ramos, Patricia Locosque; Quaggio, Ronaldo Bento; de Oliveira, Julio Cezar Franco; Pascon, Renata Castiglioni; Cruz, João Batista da; da Silva, Aline Maria; Setubal, João Carlos

    Microbial community structure and dynamics in thermophilic composting viewed through metagenomics and metatranscriptomics

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    Springer Science and Business Media LLC, 2016

    Published in: Scientific Reports

  16. Raiol, Tainá; De-Souza, Marlene Teixeira; Oliveira, João Victor A.; Silva, Helena Schubert da Incarnação Lima; Orem, Juliana Capella; Cavalcante, Danilo Andrade; Almeida, Nalvo F.; Telles, Guilherme P.; Setubal, João Carlos; Brigido, Marcelo M.; Torres, Fernando A. G.; Stadler, Peter S.; Walter, Maria Emília M. T.; Moraes, Lídia M. P.

    Draft Genome Sequence of FT9, a Novel Bacillus cereus Strain Isolated from a Brazilian Thermal Spring

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    American Society for Microbiology, 2014

    Published in: Genome Announcements