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  1. Wirbel, Jakob [Author] ; Huson, Daniel [Degree supervisor]

    Methodology for Microbiome Meta-Analyses with a Focus on Colorectal Cancer

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    Tübingen: Universitätsbibliothek Tübingen, 2022

  3. Thomann, Anne K. [Author]; Wüstenberg, Torsten [Author]; Wirbel, Jakob [Author]; Knödler, Laura-Louise [Author]; Thomann, Philipp [Author]; Zeller, Georg F. [Author]; Ebert, Matthias [Author]; Lis, Stefanie [Author]; Reindl, Wolfgang [Author]

    Depression and fatigue in active IBD from a microbiome perspective : a Bayesian approach to faecal metagenomics

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    17 October 2022

    Published in: BMC medicine ; 20(2022), Artikel-ID 366, Seite 1-17

  4. Bernardo Faura, Martí [Author]; Rinas, Melanie [Author]; Wirbel, Jakob [Author]; Pertsovskaya, Inna [Author]; Pliaka, Vicky [Author]; Messinis, Dimitris E. [Author]; Vila, Gemma [Author]; Sakellaropoulos, Theodore [Author]; Faigle, Wolfgang [Author]; Stridh, Pernilla [Author]; Behrens, Janina R. [Author]; Olsson, Tomas [Author]; Martin, Roland [Author]; Paul, Friedemann [Author]; Alexopoulos, Leonidas G. [Author]; Villoslada, Pablo [Author]; Sáez Rodríguez, Julio [Author]

    Prediction of combination therapies based on topological modeling of the immune signaling network in multiple sclerosis

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    16 July 2021

    Published in: Genome medicine ; 13(2021), Artikel-ID 117, Seite 1-16

  5. Sowah, Solomon A. [Author]; Milanese, Alessio [Author]; Schübel, Ruth [Author]; Wirbel, Jakob [Author]; Cevirgen, Ece [Author]; Johnson, Theron S. [Author]; Hirche, Frank [Author]; Grafetstätter, Mirja [Author]; Nonnenmacher, Tobias [Author]; Kirsten, Romy [Author]; López-Nogueroles, Marina [Author]; Lahoz, Agustín [Author]; Schwarz, Kathrin [Author]; Okun, Jürgen G. [Author]; Ulrich, Cornelia [Author]; Nattenmüller, Johanna [Author]; Eckardstein, Arnold von [Author]; Müller, Daniel [Author]; Stangl, Gabriele I. [Author]; Kaaks, Rudolf [Author]; Kühn, Tilman [Author]; Zeller, Georg F. [Author]

    Calorie restriction improves metabolic state independently of gut microbiome composition : a randomized dietary intervention trial

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    14 March 2022

    Published in: Genome medicine ; 14(2022), Artikel-ID 30, Seite 1-21

  12. Ruscheweyh, Hans-Joachim; Milanese, Alessio; Paoli, Lucas; Karcher, Nicolai; Clayssen, Quentin; Keller, Marisa Isabell; Wirbel, Jakob; Bork, Peer; Mende, Daniel R.; Zeller, Georg; Sunagawa, Shinichi

    Cultivation-independent genomes greatly expand taxonomic-profiling capabilities of mOTUs across various environments

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    Springer Science and Business Media LLC, 2022

    Published in: Microbiome

  13. Thomann, Anne Kerstin; Wüstenberg, Torsten; Wirbel, Jakob; Knoedler, Laura-Louise; Thomann, Philipp Arthur; Zeller, Georg; Ebert, Matthias Philip; Lis, Stefanie; Reindl, Wolfgang

    Depression and fatigue in active IBD from a microbiome perspective—a Bayesian approach to faecal metagenomics

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    Springer Science and Business Media LLC, 2022

    Published in: BMC Medicine

  14. Sambruni, Gaia; Macandog, Angeli D.; Wirbel, Jakob; Cagnina, Danilo; Catozzi, Carlotta; Dallavilla, Tiziano; Borgo, Francesca; Fazio, Nicola; Fumagalli-Romario, Uberto; Petz, Wanda L.; Manzo, Teresa; Ravenda, Simona P.; Zeller, Georg; Nezi, Luigi; Schaefer, Martin H.

    Location and condition based reconstruction of colon cancer microbiome from human RNA sequencing data

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    Springer Science and Business Media LLC, 2023

    Published in: Genome Medicine

  15. Bierwirth, Sandra; Sorbie, Adam; Coleman, Olivia; Reuß, Elena; Weber, Philipp; Köhler, Nikolai; Kacprowski, Tim; Dunkel, Andreas; Pauling, Josch; Ecker, Josef; Baumbach, Jan; Rosenstiel, Philip; Steiger, Katja; Wirbel, Jakob; Zeller, Georg; Janssen, Klaus-Peter; Haller, Dirk

    119: MUCOSAL MICROBIOTA ADAPTS TO ATF6-INDUCED ALTERATIONS IN HOST LIPID METABOLISM WITH PROGNOSTIC VALUE IN COLORECTAL CANCER

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    Elsevier BV, 2022

    Published in: Gastroenterology

  16. Bernardo-Faura, Marti; Rinas, Melanie; Wirbel, Jakob; Pertsovskaya, Inna; Pliaka, Vicky; Messinis, Dimitris E.; Vila, Gemma; Sakellaropoulos, Theodore; Faigle, Wolfgang; Stridh, Pernilla; Behrens, Janina R.; Olsson, Tomas; Martin, Roland; Paul, Friedemann; Alexopoulos, Leonidas G.; Villoslada, Pablo; Saez-Rodriguez, Julio

    Prediction of combination therapies based on topological modeling of the immune signaling network in multiple sclerosis

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    Springer Science and Business Media LLC, 2021

    Published in: Genome Medicine

  17. Sowah, Solomon A.; Milanese, Alessio; Schübel, Ruth; Wirbel, Jakob; Kartal, Ece; Johnson, Theron S.; Hirche, Frank; Grafetstätter, Mirja; Nonnenmacher, Tobias; Kirsten, Romy; López-Nogueroles, Marina; Lahoz, Agustín; Schwarz, Kathrin V.; Okun, Jürgen G.; Ulrich, Cornelia M.; Nattenmüller, Johanna; von Eckardstein, Arnold; Müller, Daniel; Stangl, Gabriele I.; Kaaks, Rudolf; Kühn, Tilman; Zeller, Georg

    Calorie restriction improves metabolic state independently of gut microbiome composition: a randomized dietary intervention trial

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    Springer Science and Business Media LLC, 2022

    Published in: Genome Medicine

  18. Maier, Lisa; Goemans, Camille V.; Wirbel, Jakob; Kuhn, Michael; Eberl, Claudia; Pruteanu, Mihaela; Müller, Patrick; Garcia-Santamarina, Sarela; Cacace, Elisabetta; Zhang, Boyao; Gekeler, Cordula; Banerjee, Tisya; Anderson, Exene Erin; Milanese, Alessio; Löber, Ulrike; Forslund, Sofia K.; Patil, Kiran Raosaheb; Zimmermann, Michael; Stecher, Bärbel; Zeller, Georg; Bork, Peer; Typas, Athanasios

    Unravelling the collateral damage of antibiotics on gut bacteria

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    Springer Science and Business Media LLC, 2021

    Published in: Nature

  19. Schmidt, Thomas SB; Hayward, Matthew R; Coelho, Luis P; Li, Simone S; Costea, Paul I; Voigt, Anita Y; Wirbel, Jakob; Maistrenko, Oleksandr M; Alves, Renato JC; Bergsten, Emma; de Beaufort, Carine; Sobhani, Iradj; Heintz-Buschart, Anna; Sunagawa, Shinichi; Zeller, Georg; Wilmes, Paul; Bork, Peer

    Extensive transmission of microbes along the gastrointestinal tract

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    eLife Sciences Publications, Ltd, 2019

    Published in: eLife

  20. Kartal, Ece; Schmidt, Thomas S B; Molina-Montes, Esther; Rodríguez-Perales, Sandra; Wirbel, Jakob; Maistrenko, Oleksandr M; Akanni, Wasiu A; Alashkar Alhamwe, Bilal; Alves, Renato J; Carrato, Alfredo; Erasmus, Hans-Peter; Estudillo, Lidia; Finkelmeier, Fabian; Fullam, Anthony; Glazek, Anna M; Gómez-Rubio, Paulina; Hercog, Rajna; Jung, Ferris; Kandels, Stefanie; Kersting, Stephan; Langheinrich, Melanie; Márquez, Mirari; Molero, Xavier; Orakov, Askarbek; [...]

    A faecal microbiota signature with high specificity for pancreatic cancer

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    BMJ, 2022

    Published in: Gut