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Bouteldja, Nassim [Author]; Klinkhammer, Barbara Mara [Author]; Schlaich, Tarek [Author]; Boor, Peter [Author]; Merhof, Dorit [Author]

Improving unsupervised stain-to-stain translation using self-supervision and meta-learning

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https://publications.rwth-aachen.de/record/850696

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Aachen: Universitätsbibliothek der RWTH Aachen, 2021
Joodaki, Mehdi [Author]; Shaigan, Mina [Author]; Parra, Victor [Author]; Bülow, Roman D. [Author]; Kuppe, Christoph [Author]; Hölscher, David L. [Author]; Cheng, Mingbo [Author]; Nagai, James S. [Author]; Bouteldja, Nassim [Author]; Tesar, Vladimir [Author]; Barratt, Jonathan [Author]; Roberts, Ian S. D. [Author]; Coppo, Rosanna [Author]; Kramann, Rafael [Author]; Boor, Peter [Author]; Costa Filho, Ivan Gesteira [Author]

Detection of PatIent-Level distances from single cell genomics and pathomics data with Optimal Transport (PILOT)

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https://nbn-resolving.org/urn:nbn:de:101:1-2023012800442451658005

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Aachen: Universitätsbibliothek der RWTH Aachen, 2022
Boor, Peter [Author]; Hölscher, David L. [Author]; Bouteldja, Nassim [Author]; Joodaki, Mehdi [Author]; Russo, Maria [Author]; Lan, Yu-Chia [Author]; Sadr, Alireza [Author]; Cheng, Mingbo [Author]; Tesar, Vladimir [Author]; von Stillfried, Saskia [Author]; Klinkhammer, Barbara Mara [Author]; Barratt, Jonathan [Author]; Flöge, Jürgen [Author]; Roberts, Ian [Author]; Coppo, Rosanna [Author]; Costa Filho, Ivan Gesteira [Author]; Bülow, Roman D. [Author]

Next-Generation Morphometry for pathomics-data mining in histopathology

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https://nbn-resolving.org/urn:nbn:de:101:1-2023012800424597207743

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Aachen: Universitätsbibliothek der RWTH Aachen, 2022
Blendowski, Max; Bouteldja, Nassim; Heinrich, Mattias P.

Multimodal 3D medical image registration guided by shape encoder–decoder networks

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Springer Science and Business Media LLC, 2020

Published in: International Journal of Computer Assisted Radiology and Surgery
Bouteldja, Nassim; Klinkhammer, Barbara M.; Schlaich, Tarek; Boor, Peter; Merhof, Dorit

Improving unsupervised stain-to-stain translation using self-supervision and meta-learning

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Elsevier BV, 2022

Published in: Journal of Pathology Informatics
Hölscher, David; Bouteldja, Nassim; Lan, Yu-Chia; von Stillfried, Saskia; David Bülow, Roman; Boor, Peter

MO062: Pan-Disease Segmentation and Feature Extraction for Large-Scale Digital Nephropathology

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Oxford University Press (OUP), 2022

Published in: Nephrology Dialysis Transplantation
Bouteldja, Nassim; Hölscher, David L.; Bülow, Roman D.; Roberts, Ian S.D.; Coppo, Rosanna; Boor, Peter

Tackling stain variability using CycleGAN-based stain augmentation

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Elsevier BV, 2022

Published in: Journal of Pathology Informatics
Lucas, Christian; Kemmling, André; Bouteldja, Nassim; Aulmann, Linda F.; Madany Mamlouk, Amir; Heinrich, Mattias P.

Learning to Predict Ischemic Stroke Growth on Acute CT Perfusion Data by Interpolating Low-Dimensional Shape Representations

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Frontiers Media SA, 2018

Published in: Frontiers in Neurology
Gupta, Laxmi; Klinkhammer, Barbara Mara; Seikrit, Claudia; Fan, Nina; Bouteldja, Nassim; Gräbel, Philipp; Gadermayr, Michael; Boor, Peter; Merhof, Dorit

Large-scale extraction of interpretable features provides new insights into kidney histopathology – A proof-of-concept study

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Elsevier BV, 2022

Published in: Journal of Pathology Informatics
Bouteldja, Nassim; Hölscher, David Laurin; Klinkhammer, Barbara Mara; Buelow, Roman David; Lotz, Johannes; Weiss, Nick; Daniel, Christoph; Amann, Kerstin; Boor, Peter

Stain-Independent Deep Learning–Based Analysis of Digital Kidney Histopathology

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Elsevier BV, 2023

Published in: The American Journal of Pathology
Joodaki, Mehdi; Shaigan, Mina; Parra, Victor; Bülow, Roman D; Kuppe, Christoph; Hölscher, David L; Cheng, Mingbo; Nagai, James S; Goedertier, Michaël; Bouteldja, Nassim; Tesar, Vladimir; Barratt, Jonathan; Roberts, Ian SD; Coppo, Rosanna; Kramann, Rafael; Boor, Peter; Costa, Ivan G

Detection of PatIent-Level distances from single cell genomics and pathomics data with Optimal Transport (PILOT)

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Springer Science and Business Media LLC, 2023

Published in: Molecular Systems Biology
Oswald, Eva; Bug, Daniel; Grote, Anne; Lashuk, Kanstantsin; Bouteldja, Nassim; Lenhard, Dorothee; Löhr, Anne; Behnke, Anke; Knauff, Volker; Edinger, Anna; Klingner, Kerstin; Gaedicke, Simone; Niedermann, Gabriele; Merhof, Dorit; Feuerhake, Friedrich; Schueler, Julia

Immune cell infiltration pattern in non-small cell lung cancer PDX models is a model immanent feature and correlates with a distinct molecular and phenotypic make-up

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BMJ, 2022

Published in: Journal for ImmunoTherapy of Cancer
Hölscher, David L.; Bouteldja, Nassim; Joodaki, Mehdi; Russo, Maria L.; Lan, Yu-Chia; Sadr, Alireza Vafaei; Cheng, Mingbo; Tesar, Vladimir; Stillfried, Saskia V.; Klinkhammer, Barbara M.; Barratt, Jonathan; Floege, Jürgen; Roberts, Ian S. D.; Coppo, Rosanna; Costa, Ivan G.; Bülow, Roman D.; Boor, Peter

Next-Generation Morphometry for pathomics-data mining in histopathology

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Springer Science and Business Media LLC, 2023

Published in: Nature Communications
Bouteldja, Nassim; Klinkhammer, Barbara M.; Bülow, Roman D.; Droste, Patrick; Otten, Simon W.; Freifrau von Stillfried, Saskia; Moellmann, Julia; Sheehan, Susan M.; Korstanje, Ron; Menzel, Sylvia; Bankhead, Peter; Mietsch, Matthias; Drummer, Charis; Lehrke, Michael; Kramann, Rafael; Floege, Jürgen; Boor, Peter; Merhof, Dorit

Deep Learning–Based Segmentation and Quantification in Experimental Kidney Histopathology

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Ovid Technologies (Wolters Kluwer Health), 2021

Published in: Journal of the American Society of Nephrology
Homeyer, André; Geißler, Christian; Schwen, Lars Ole; Zakrzewski, Falk; Evans, Theodore; Strohmenger, Klaus; Westphal, Max; Bülow, Roman David; Kargl, Michaela; Karjauv, Aray; Munné-Bertran, Isidre; Retzlaff, Carl Orge; Romero-López, Adrià; Sołtysiński, Tomasz; Plass, Markus; Carvalho, Rita; Steinbach, Peter; Lan, Yu-Chia; Bouteldja, Nassim; Haber, David; Rojas-Carulla, Mateo; Vafaei Sadr, Alireza; Kraft, Matthias; Krüger, Daniel; [...]

Publisher Correction to: Recommendations on compiling test datasets for evaluating artificial intelligence solutions in pathology

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Elsevier BV, 2022

Published in: Modern Pathology
Homeyer, André; Geißler, Christian; Schwen, Lars Ole; Zakrzewski, Falk; Evans, Theodore; Strohmenger, Klaus; Westphal, Max; Bülow, Roman David; Kargl, Michaela; Karjauv, Aray; Munné-Bertran, Isidre; Retzlaff, Carl Orge; Romero-López, Adrià; Sołtysiński, Tomasz; Plass, Markus; Carvalho, Rita; Steinbach, Peter; Lan, Yu-Chia; Bouteldja, Nassim; Haber, David; Rojas-Carulla, Mateo; Vafaei Sadr, Alireza; Kraft, Matthias; Krüger, Daniel; [...]

Recommendations on compiling test datasets for evaluating artificial intelligence solutions in pathology

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Elsevier BV, 2022

Published in: Modern Pathology

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