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Martignetti, Loredana [Author]

ROMA: Representation and Quantification of Activity from target expression data

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[Erscheinungsort nicht ermittelbar]: Institut des Hautes Études Scientifiques (IHÉS), 2018

Published in: From Molecules and Cells to Human Health: Ideas and concepts ; (Jan. 2018)
Seabra, Miguel [Author]; Martignetti, Loredana [Author]; Hay, Amir [Author]; Duménil, Ana Maria Lennon [Author]; Bellan, Annick Harel [Author]; Goud, Bruno [Author]; Boone, Charlie [Author]; Drubin, David [Author]; Brial, François [Author]; Vert, Jean-Philippe [Author]; Shah, Jimit [Author]; Shen, Jingshi [Author]; Bader, Joëlle [Author]; Mostov, Keith E. [Author]; Peshkin, Leonid [Author]; Bosch, Ludo Van Den [Author]; Gromov, Mikhail [Author]; Sonenberg, Nahum [Author]; Nakamura, Naotoshi [Author]; Segev, Nava [Author]; Malhotra, Vivek [Author]; Lehner, Ben [Author]; Segev, Nava [Author]; Christodoulou, John [Author]; [...] ; Institut des hautes études scientifiques Bures-sur-Yvette

From Molecules and Cells to Human Health

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[Bures-sur-Yvette]: [Institut des hautes études scientifiques (IHÉS)], 2018
Martignetti, Loredana; Caselle, Michele

Universal power law behaviors in genomic sequences and evolutionary models

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American Physical Society (APS), 2007

Published in: Physical Review E, 76 (2007) 2
Lovino, Marta; Ficarra, Elisa; Martignetti, Loredana

Integrated microRNA and proteome analysis of cancer datasets with MoPC

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Public Library of Science (PLoS), 2024

Published in: PLOS ONE, 19 (2024) 3, Seite e0289699
Malagoli, Gabriele; Valle, Filippo; Barillot, Emmanuel; Caselle, Michele; Martignetti, Loredana

Identification of Interpretable Clusters and Associated Signatures in Breast Cancer Single-Cell Data: A Topic Modeling Approach

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MDPI AG, 2024

Published in: Cancers, 16 (2024) 7, Seite 1350
Pianfetti, Elena; Lovino, Marta; Ficarra, Elisa; Martignetti, Loredana

MiREx: mRNA levels prediction from gene sequence and miRNA target knowledge

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Springer Science and Business Media LLC, 2023

Published in: BMC Bioinformatics, 24 (2023) 1
Cortal, Akira; Martignetti, Loredana; Six, Emmanuelle; Rausell, Antonio

Gene signature extraction and cell identity recognition at the single-cell level with Cell-ID

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Springer Science and Business Media LLC, 2021

Published in: Nature Biotechnology, 39 (2021) 9, Seite 1095-1102
Martignetti, Loredana; Calzone, Laurence; Bonnet, Eric; Barillot, Emmanuel; Zinovyev, Andrei

ROMA: Representation and Quantification of Module Activity from Target Expression Data

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Frontiers Media SA, 2016

Published in: Frontiers in Genetics, 7 (2016)
Montagud, Arnau; Traynard, Pauline; Martignetti, Loredana; Bonnet, Eric; Barillot, Emmanuel; Zinovyev, Andrei; Calzone, Laurence

Conceptual and computational framework for logical modelling of biological networks deregulated in diseases

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Oxford University Press (OUP), 2019

Published in: Briefings in Bioinformatics, 20 (2019) 4, Seite 1238-1249
Cantini, Laura; Calzone, Laurence; Martignetti, Loredana; Rydenfelt, Mattias; Blüthgen, Nils; Barillot, Emmanuel; Zinovyev, Andrei

Classification of gene signatures for their information value and functional redundancy

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Springer Science and Business Media LLC, 2017

Published in: npj Systems Biology and Applications, 4 (2017) 1
Martignetti, Loredana; Tesson, Bruno; Almeida, Anna; Zinovyev, Andrei; Tucker, Gordon C; Dubois, Thierry; Barillot, Emmanuel

Detection of miRNA regulatory effect on triple negative breast cancer transcriptome

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Springer Science and Business Media LLC, 2015

Published in: BMC Genomics, 16 (2015) S6
Cohen, David P. A.; Martignetti, Loredana; Robine, Sylvie; Barillot, Emmanuel; Zinovyev, Andrei; Calzone, Laurence

Mathematical Modelling of Molecular Pathways Enabling Tumour Cell Invasion and Migration

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Public Library of Science (PLoS), 2015

Published in: PLOS Computational Biology, 11 (2015) 11, Seite e1004571
Najm, Matthieu; Cornet, Matthieu; Albergante, Luca; Zinovyev, Andrei; Sermet-Gaudelus, Isabelle; Stoven, Véronique; Calzone, Laurence; Martignetti, Loredana

Representation and quantification of module activity from omics data with rROMA

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Springer Science and Business Media LLC, 2024

Published in: npj Systems Biology and Applications, 10 (2024) 1
Cantini, Laura; Bertoli, Gloria; Cava, Claudia; Dubois, Thierry; Zinovyev, Andrei; Caselle, Michele; Castiglioni, Isabella; Barillot, Emmanuel; Martignetti, Loredana

Identification of microRNA clusters cooperatively acting on epithelial to mesenchymal transition in triple negative breast cancer

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Oxford University Press (OUP), 2019

Published in: Nucleic Acids Research, 47 (2019) 5, Seite 2205-2215
Martignetti, Loredana; Laud-Duval, Karine; Tirode, Franck; Pierron, Gaelle; Reynaud, Stéphanie; Barillot, Emmanuel; Delattre, Olivier; Zinovyev, Andrei

Antagonism Pattern Detection between MicroRNA and Target Expression in Ewing’s Sarcoma

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Public Library of Science (PLoS), 2012

Published in: PLoS ONE, 7 (2012) 7, Seite e41770
Gauthier, Sebastien; Pranke, Iwona; Jung, Vincent; Martignetti, Loredana; Stoven, Véronique; Nguyen-Khoa, Thao; Semeraro, Michaela; Hinzpeter, Alexandre; Edelman, Aleksander; Guerrera, Ida Chiara; Sermet-Gaudelus, Isabelle

Urinary Exosomes of Patients with Cystic Fibrosis Unravel CFTR-Related Renal Disease

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MDPI AG, 2020

Published in: International Journal of Molecular Sciences, 21 (2020) 18, Seite 6625
Meryet-Figuiere, Matthieu; Vernon, Mégane; Andrianteranagna, Mamy; Lambert, Bernard; Brochen, Célia; Issartel, Jean-Paul; Guttin, Audrey; Gauduchon, Pascal; Brotin, Emilie; Dingli, Florent; Loew, Damarys; Vigneron, Nicolas; Wambecke, Anaïs; Abeilard, Edwige; Barillot, Emmanuel; Poulain, Laurent; Martignetti, Loredana; Denoyelle, Christophe

Network-Based Integration of Multi-Omics Data Identifies the Determinants of miR-491-5p Effects

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MDPI AG, 2021

Published in: Cancers, 13 (2021) 16, Seite 3970
Forget, Antoine; Loredana, Martignetti; Brabetz, Sebastian; Picard, Daniel; Puget, Stephanie; Calzone, Laurence; Poullet, Patrick; Montagud, Arnau; Liva, Stephane; Dingli, Florent; Arras, Guillaume; Yu, Hua; Mercier, Audrey; Pouponnot, Celio; Loew, Damarys; Bourdeaut, Franck; Dufour, Christelle; Varlet, Pascale; Taylor, Michael; Kool, Marcel; Pfister, Stefan M; Barillot, Emmanuel; Remke, Marc; Olivier, Ayrault

CSIG-15. PROTEOMIC AND PHOSPHOPROTEOMIC ANALYSIS OF HUMAN MEDULLOBLASTOMA REVEALS DISTINCT ACTIVATED PATHWAYS BETWEEN SUBGROUPS

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Oxford University Press (OUP), 2017

Published in: Neuro-Oncology, 19 (2017) suppl_6, Seite vi52-vi53
Chanrion, Maia; Kuperstein, Inna; Barrière, Cédric; El Marjou, Fatima; Cohen, David; Vignjevic, Danijela; Stimmer, Lev; Paul-Gilloteaux, Perrine; Bièche, Ivan; Tavares, Silvina Dos Reis; Boccia, Giuseppe-Fulvio; Cacheux, Wulfran; Meseure, Didier; Fre, Silvia; Martignetti, Loredana; Legoix-Né, Patricia; Girard, Elodie; Fetler, Luc; Barillot, Emmanuel; Louvard, Daniel; Zinovyev, Andreï; Robine, Sylvie

Concomitant Notch activation and p53 deletion trigger epithelial-to-mesenchymal transition and metastasis in mouse gut

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Springer Science and Business Media LLC, 2014

Published in: Nature Communications, 5 (2014) 1
Sobrino, Steicy; Magnani, Alessandra; Semeraro, Michaela; Martignetti, Loredana; Cortal, Akira; Denis, Adeline; Couzin, Chloé; Picard, Capucine; Bustamante, Jacinta; Magrin, Elisa; Joseph, Laure; Roudaut, Cécile; Gabrion, Aurélie; Soheili, Tayebeh; Cordier, Corinne; Lortholary, Olivier; Lefrere, François; Rieux-Laucat, Frédéric; Casanova, Jean-Laurent; Bodard, Sylvain; Boddaert, Nathalie; Thrasher, Adrian J.; Touzot, Fabien; Taque, Sophie; [...]

Severe hematopoietic stem cell inflammation compromises chronic granulomatous disease gene therapy

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Elsevier BV, 2023

Published in: Cell Reports Medicine, 4 (2023) 2, Seite 100919

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