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Rose, Tim Daniel [Author] ; Pauling, Josch K. [Degree supervisor]; Pauling, Josch K. [Other]; Hauschild, Anne-Christin [Other]; Dawid, Corinna [Other]

Computational strategies employing stratification and network analysis to advance lipidomics-driven research

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https://d-nb.info/1284807193/34

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München: Universitätsbibliothek der TU München, 2023
Rose, Tim Daniel [Author] ; Pauling, Josch K. [Degree supervisor]; Pauling, Josch K. [Other]; Hauschild, Anne-Christin [Other]; Dawid, Corinna [Other]

Computational strategies employing stratification and network analysis to advance lipidomics-driven research

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https://nbn-resolving.org/urn:nbn:de:bvb:91-diss-20230313-1685440-1-2

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München: Universitätsbibliothek der TU München, 2023
Köhler, Nikolai [Author]; Höring, Marcus [Author]; Czepukojc, Beate [Author]; Rose, Tim Daniel [Author]; Büchler, Christa [Author]; Kröhler, Tarek [Author]; Haybäck, Johannes [Author]; Liebisch, Gerhard [Author]; Pauling, Josch K. [Author]; Keßler, Sonja [Author]; Kiemer, Alexandra Kathrin [Author]

Kupffer cells are protective in alcoholic steatosis

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2022

Published in: Biochimica et biophysica acta / Molecular basis of disease ; 1868(2022), 6, Artikel-ID 166398
Pauling, Josch K.; Klipp, Edda

Computational Lipidomics and Lipid Bioinformatics: Filling In the Blanks

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Walter de Gruyter GmbH, 2016

Published in: Journal of Integrative Bioinformatics
Rose, Tim D; Köhler, Nikolai; Falk, Lisa; Klischat, Lucie; Lazareva, Olga E; Pauling, Josch K

Lipid network and moiety analysis for revealing enzymatic dysregulation and mechanistic alterations from lipidomics data

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Oxford University Press (OUP), 2023

Published in: Briefings in Bioinformatics
Pauling, Josch K.; Hermansson, Martin; Hartler, Jürgen; Christiansen, Klaus; Gallego, Sandra F.; Peng, Bing; Ahrends, Robert; Ejsing, Christer S.

Proposal for a common nomenclature for fragment ions in mass spectra of lipids

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Public Library of Science (PLoS), 2017

Published in: PLOS ONE
Damiani, Tito; Bonciarelli, Stefano; Thallinger, Gerhard G.; Koehler, Nikolai; Krettler, Christoph A.; Salihoğlu, Arif K.; Korf, Ansgar; Pauling, Josch K.; Pluskal, Tomáš; Ni, Zhixu; Goracci, Laura

Correction to “Software and Computational Tools for LC-MS-Based Epilipidomics: Challenges and Solutions”

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American Chemical Society (ACS), 2023

Published in: Analytical Chemistry
Damiani, Tito; Bonciarelli, Stefano; Thallinger, Gerhard G.; Koehler, Nikolai; Krettler, Christoph A.; Salihoğlu, Arif K.; Korf, Ansgar; Pauling, Josch K.; Pluskal, Tomáš; Ni, Zhixu; Goracci, Laura

Software and Computational Tools for LC-MS-Based Epilipidomics: Challenges and Solutions

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American Chemical Society (ACS), 2023

Published in: Analytical Chemistry
Köhler, Nikolai; Höring, Marcus; Czepukojc, Beate; Rose, Tim Daniel; Buechler, Christa; Kröhler, Tarek; Haybaeck, Johannes; Liebisch, Gerhard; Pauling, Josch K.; Kessler, Sonja M.; Kiemer, Alexandra K.

Kupffer cells are protective in alcoholic steatosis

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Elsevier BV, 2022

Published in: Biochimica et Biophysica Acta (BBA) - Molecular Basis of Disease
Tietel, Zipora; Hammann, Simon; Meckelmann, Sven W.; Ziv, Carmit; Pauling, Josch K.; Wölk, Michele; Würf, Vivian; Alves, Eliana; Neves, Bruna; Domingues, M. Rosário

An overview of food lipids toward food lipidomics

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Wiley, 2023

Published in: Comprehensive Reviews in Food Science and Food Safety
Wolff, Justus; Matschinske, Julian; Baumgart, Dietrich; Pytlik, Anne; Keck, Andreas; Natarajan, Arunakiry; von Schacky, Claudio E.; Pauling, Josch K.; Baumbach, Jan

Federated machine learning for a facilitated implementation of Artificial Intelligence in healthcare – a proof of concept study for the prediction of coronary artery calcification scores

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Walter de Gruyter GmbH, 2022

Published in: Journal of Integrative Bioinformatics
Haberl, Elisabeth M.; Weiss, Thomas S.; Peschel, Georg; Weigand, Kilian; Köhler, Nikolai; Pauling, Josch K.; Wenzel, Jürgen J.; Höring, Marcus; Krautbauer, Sabrina; Liebisch, Gerhard; Buechler, Christa

Liver Lipids of Patients with Hepatitis B and C and Associated Hepatocellular Carcinoma

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MDPI AG, 2021

Published in: International Journal of Molecular Sciences
Ellis, Shane R.; Paine, Martin R. L.; Eijkel, Gert B.; Pauling, Josch K.; Husen, Peter; Jervelund, Mark W.; Hermansson, Martin; Ejsing, Christer S.; Heeren, Ron M. A.

Automated, parallel mass spectrometry imaging and structural identification of lipids

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Springer Science and Business Media LLC, 2018

Published in: Nature Methods
Pauling, Josch K.; Christensen, Anne G.; Batra, Richa; Alcaraz, Nicolas; Barbosa, Eudes; Larsen, Martin R.; Beck, Hans C.; Leth-Larsen, Rikke; Azevedo, Vasco; Ditzel, Henrik J.; Baumbach, Jan

Elucidation of epithelial–mesenchymal transition-related pathways in a triple-negative breast cancer cell line model by multi-omics interactome analysis

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Oxford University Press (OUP), 2014

Published in: Integr. Biol.
Zakharkina, Tetyana; Heinzel, Elke; Koczulla, Rembert A.; Greulich, Timm; Rentz, Katharina; Pauling, Josch K.; Baumbach, Jan; Herrmann, Mathias; Grünewald, Christiane; Dienemann, Hendrik; von Müller, Lutz; Bals, Robert

Analysis of the Airway Microbiota of Healthy Individuals and Patients with Chronic Obstructive Pulmonary Disease by T-RFLP and Clone Sequencing

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Public Library of Science (PLoS), 2013

Published in: PLoS ONE
Sadegh, Sepideh; Matschinske, Julian; Blumenthal, David B.; Galindez, Gihanna; Kacprowski, Tim; List, Markus; Nasirigerdeh, Reza; Oubounyt, Mhaned; Pichlmair, Andreas; Rose, Tim Daniel; Salgado-Albarrán, Marisol; Späth, Julian; Stukalov, Alexey; Wenke, Nina K.; Yuan, Kevin; Pauling, Josch K.; Baumbach, Jan

Exploring the SARS-CoV-2 virus-host-drug interactome for drug repurposing

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Springer Science and Business Media LLC, 2020

Published in: Nature Communications
Dieckmann, Sebastian; Strohmeyer, Akim; Willershäuser, Monja; Maurer, Stefanie F.; Wurst, Wolfgang; Marschall, Susan; de Angelis, Martin Hrabe; Kühn, Ralf; Worthmann, Anna; Fuh, Marceline M.; Heeren, Joerg; Köhler, Nikolai; Pauling, Josch K.; Klingenspor, Martin

Susceptibility to diet-induced obesity at thermoneutral conditions is independent of UCP1

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American Physiological Society, 2022

Published in: American Journal of Physiology-Endocrinology and Metabolism
Flosbach, Markus; Oberle, Susanne G.; Scherer, Stefanie; Zecha, Jana; von Hoesslin, Madlaina; Wiede, Florian; Chennupati, Vijaykumar; Cullen, Jolie G.; List, Markus; Pauling, Josch K.; Baumbach, Jan; Kuster, Bernhard; Tiganis, Tony; Zehn, Dietmar

PTPN2 Deficiency Enhances Programmed T Cell Expansion and Survival Capacity of Activated T Cells

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Elsevier BV, 2020

Published in: Cell Reports
Lechner, Severin; Malgapo, Martin Ian P.; Grätz, Christian; Steimbach, Raphael R.; Baron, Agnes; Rüther, Patrick; Nadal, Simon; Stumpf, Carmen; Loos, Christina; Ku, Xin; Prokofeva, Polina; Lautenbacher, Ludwig; Heimburg, Tino; Würf, Vivian; Meng, Chen; Wilhelm, Mathias; Sippl, Wolfgang; Kleigrewe, Karin; Pauling, Josch K.; Kramer, Karl; Miller, Aubry K.; Pfaffl, Michael W.; Linder, Maurine E.; Kuster, Bernhard;

Author Correction: Target deconvolution of HDAC pharmacopoeia reveals MBLAC2 as common off-target

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Springer Science and Business Media LLC, 2022

Published in: Nature Chemical Biology
Lechner, Severin; Malgapo, Martin Ian P.; Grätz, Christian; Steimbach, Raphael R.; Baron, Agnes; Rüther, Patrick; Nadal, Simon; Stumpf, Carmen; Loos, Christina; Ku, Xin; Prokofeva, Polina; Lautenbacher, Ludwig; Heimburg, Tino; Würf, Vivian; Meng, Chen; Wilhelm, Mathias; Sippl, Wolfgang; Kleigrewe, Karin; Pauling, Josch K.; Kramer, Karl; Miller, Aubry K.; Pfaffl, Michael W.; Linder, Maurine E.; Kuster, Bernhard;

Target deconvolution of HDAC pharmacopoeia reveals MBLAC2 as common off-target

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Springer Science and Business Media LLC, 2022

Published in: Nature Chemical Biology

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