Skip to contents

  1. Guo, Dan [Author]; Föll, Melanie Christine [Author]; Volkmann, Veronika [Author]; Enderle-Ammour, Kathrin [Author]; Bronsert, Peter [Author]; Schilling, Oliver [Author]; Vitek, Olga [Author]

    Deep multiple instance learning classifies subtissue locations in mass spectrometry images from tissue-level annotations

    Books
    View online
    Schließen
    Close

    Bookmarks

    You can manage bookmarks using lists, please log in to your user account for this.

    Oxford: Oxford University Press, 2020

    Published in: Bioinformatics ; 36, Supplement_1 (2020), i300-i308

  2. Föll, Melanie Christine [Author]; Fahrner, Matthias [Author]; Oria, Victor Oginga [Author]; Kühs, Markus [Author]; Biniossek, Martin Lothar [Author]; Werner, Martin [Author]; Bronsert, Peter [Author]; Schilling, Oliver [Author]

    Reproducible proteomics sample preparation for single FFPE tissue slices using acid-labile surfactant and direct trypsinization

    Books
    View online
    Schließen
    Close

    Bookmarks

    You can manage bookmarks using lists, please log in to your user account for this.

    Totowa, NJ: Humana Press, 2018

    Published in: Clinical proteomics ; 15 (2018), article no. 11

  3. Föll, Melanie Christine [Author]; Moritz, Lennart [Author]; Wollmann, Thomas [Author]; Stillger, Maren Nicole [Author]; Vockert, Niklas [Author]; Werner, Martin [Author]; Bronsert, Peter [Author]; Rohr, Karl [Author]; Grüning, Björn [Author]; Schilling, Oliver [Author]

    Accessible and reproducible mass spectrometry imaging data analysis in Galaxy

    Books
    View online
    Schließen
    Close

    Bookmarks

    You can manage bookmarks using lists, please log in to your user account for this.

    Oxford: Oxford University Press, 2019

    Published in: GigaScience ; 8, 12 (2019), giz143

  4. Müller, Ann-Kathrin [Author]; Föll, Melanie Christine [Author]; Heckelmann, Bianca [Author]; Kiefer, Selina [Author]; Werner, Martin [Author]; Schilling, Oliver [Author]; Biniossek, Martin Lothar [Author]; Jilg, Cordula [Author]; Drendel, Vanessa [Author]

    Proteomic characterization of prostate cancer to distinguish nonmetastasizing and metastasizing primary tumors and lymph node metastases

    Books
    View online
    Schließen
    Close

    Bookmarks

    You can manage bookmarks using lists, please log in to your user account for this.

    Amsterdam: Elsevier BV, 2018

    Published in: Neoplasia ; 20, 2 (2018), 140-151

  5. Serrano-Solano, Beatriz [Author]; Föll, Melanie Christine [Author]; Gallardo-Alba, Cristóbal [Author]; Erxleben, Anika [Author]; Rasche, Helena [Author]; Hiltemann, Saskia [Author]; Fahrner, Matthias [Author]; Dunning, Mark J. [Author]; Schulz, Marcel Holger [Author]; Scholtz, Beáta [Author]; Clements, Dave [Author]; Nekrutenko, Anton [Author]; Batut, Bérénice [Author]; Grüning, Björn [Author]

    Fostering accessible online education using Galaxy as an e-learning platform

    Books
    View online
    Schließen
    Close

    Bookmarks

    You can manage bookmarks using lists, please log in to your user account for this.

    San Francisco, CA: Public Library of Science (PLoS), 2021

    Published in: PLOS computational biology ; 17, 5 (2021), e1008923

  6. Dai, Chengxin [Author]; Füllgrabe, Anja [Author]; Pfeuffer, Julianus [Author]; Solovyeva, Elizaveta M. [Author]; Deng, Jingwen [Author]; Moreno, Pablo [Author]; Kamatchinathan, Selvakumar [Author]; Kundu, Deepti Jaiswal [Author]; George, Nancy [Author]; Fexova, Silvie [Author]; Grüning, Björn [Author]; Föll, Melanie Christine [Author]; Griss, Johannes [Author]; Vaudel, Marc [Author]; Audain, Enrique [Author]; Locard-Paulet, Marie [Author]; Turewicz, Michael Andreas [Author]; Eisenacher, Martin [Author]; Uszkoreit, Julian [Author]; Bossche, Tim Van Den [Author]; Schwämmle, Veit [Author]; Webel, Henry [Author]; Schulze, Stefan [Author]; Bouyssié, David [Author]; [...]

    A proteomics sample metadata representation for multiomics integration and big data analysis

    Articles
    View online
    Schließen
    Close

    Bookmarks

    You can manage bookmarks using lists, please log in to your user account for this.

    2021

    Published in: Nature Communications ; 12(2021), 1, Artikel-ID 5854, Seite 1-8

  11. Guo, Dan; Föll, Melanie Christine; Volkmann, Veronika; Enderle-Ammour, Kathrin; Bronsert, Peter; Schilling, Oliver; Vitek, Olga

    Deep multiple instance learning classifies subtissue locations in mass spectrometry images from tissue-level annotations

    Articles
    View online
    Schließen

    Access

    Close

    Bookmarks

    You can manage bookmarks using lists, please log in to your user account for this.

    Oxford University Press (OUP), 2020

    Published in: Bioinformatics, 36 (2020) Supplement_1, Seite i300-i308

  12. Föll, Melanie Christine; Volkmann, Veronika; Enderle-Ammour, Kathrin; Timme, Sylvia; Wilhelm, Konrad; Guo, Dan; Vitek, Olga; Bronsert, Peter; Schilling, Oliver

    Moving translational mass spectrometry imaging towards transparent and reproducible data analyses: a case study of an urothelial cancer cohort analyzed in the Galaxy framework

    Articles
    View online
    Schließen

    Access

    Close

    Bookmarks

    You can manage bookmarks using lists, please log in to your user account for this.

    Springer Science and Business Media LLC, 2022

    Published in: Clinical Proteomics, 19 (2022) 1

  13. Föll, Melanie Christine; Fahrner, Matthias; Oria, Victor Oginga; Kühs, Markus; Biniossek, Martin Lothar; Werner, Martin; Bronsert, Peter; Schilling, Oliver

    Reproducible proteomics sample preparation for single FFPE tissue slices using acid-labile surfactant and direct trypsinization

    Articles
    View online
    Schließen

    Access

    Close

    Bookmarks

    You can manage bookmarks using lists, please log in to your user account for this.

    Springer Science and Business Media LLC, 2018

    Published in: Clinical Proteomics, 15 (2018) 1

  14. Pinter, Niko; Glätzer, Damian; Fahrner, Matthias; Fröhlich, Klemens; Johnson, James; Grüning, Björn Andreas; Warscheid, Bettina; Drepper, Friedel; Schilling, Oliver; Föll, Melanie Christine

    MaxQuant and MSstats in Galaxy Enable Reproducible Cloud-Based Analysis of Quantitative Proteomics Experiments for Everyone

    Articles
    View online
    Schließen

    Access

    Close

    Bookmarks

    You can manage bookmarks using lists, please log in to your user account for this.

    American Chemical Society (ACS), 2022

    Published in: Journal of Proteome Research, 21 (2022) 6, Seite 1558-1565

  16. Hiltemann, Saskia; Rasche, Helena; Gladman, Simon; Hotz, Hans-Rudolf; Larivière, Delphine; Blankenberg, Daniel; Jagtap, Pratik D.; Wollmann, Thomas; Bretaudeau, Anthony; Goué, Nadia; Griffin, Timothy J.; Royaux, Coline; Le Bras, Yvan; Mehta, Subina; Syme, Anna; Coppens, Frederik; Droesbeke, Bert; Soranzo, Nicola; Bacon, Wendi; Psomopoulos, Fotis; Gallardo-Alba, Cristóbal; Davis, John; Föll, Melanie Christine; Fahrner, Matthias; [...]

    Galaxy Training: A powerful framework for teaching!

    Articles
    View online
    Schließen

    Access

    Close

    Bookmarks

    You can manage bookmarks using lists, please log in to your user account for this.

    Public Library of Science (PLoS), 2023

    Published in: PLOS Computational Biology, 19 (2023) 1, Seite e1010752

  17. Dai, Chengxin; Füllgrabe, Anja; Pfeuffer, Julianus; Solovyeva, Elizaveta M.; Deng, Jingwen; Moreno, Pablo; Kamatchinathan, Selvakumar; Kundu, Deepti Jaiswal; George, Nancy; Fexova, Silvie; Grüning, Björn; Föll, Melanie Christine; Griss, Johannes; Vaudel, Marc; Audain, Enrique; Locard-Paulet, Marie; Turewicz, Michael; Eisenacher, Martin; Uszkoreit, Julian; Van Den Bossche, Tim; Schwämmle, Veit; Webel, Henry; Schulze, Stefan; Bouyssié, David; [...]

    A proteomics sample metadata representation for multiomics integration and big data analysis

    Articles
    View online
    Schließen

    Access

    Close

    Bookmarks

    You can manage bookmarks using lists, please log in to your user account for this.

    Springer Science and Business Media LLC, 2021

    Published in: Nature Communications, 12 (2021) 1

  18. Chambers, David; Simpson, Lisa; Neta, Gila; Schwarz, Ulrica von Thiele; Percy-Laurry, Antoinette; Aarons, Gregory A.; Neta, Gila; Brownson, Ross; Vogel, Amanda; Stirman, Shannon Wiltsey; Sherr, Kenneth; Sturke, Rachel; Norton, Wynne E.; Varley, Allyson; Chambers, David; Vinson, Cynthia; Klesges, Lisa; Heurtin-Roberts, Suzanne; Massoud, M. Rashad; Kimble, Leighann; Beck, Arne; Neely, Claire; Boggs, Jennifer; Nichols, Carmel; [...]

    Proceedings from the 9th annual conference on the science of dissemination and implementation : Washington, DC, USA. 14-15 December 2016 : Washington, DC, USA. 14-15 December 2016

    Articles
    View online
    Schließen

    Access

    Close

    Bookmarks

    You can manage bookmarks using lists, please log in to your user account for this.

    Springer Science and Business Media LLC, 2017

    Published in: Implementation Science, 12 (2017) S1