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Ferro, Alfredo; Giugno, Rosalba; Puglisi, Piera Laura; Pulvirenti, Alfredo

Data Warehousing and Knowledge Discovery: An Efficient Duplicate Record Detection Using q-Grams Array Inverted Index

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Springer Berlin Heidelberg, 2010

Published in: Data Warehousing and Knowledge Discovery (2010), Seite 309-323
Ferro, Alfredo; Giugno, Rosalba; Puglisi, Piera Laura; Pulvirenti, Alfredo

Knowledge-Based and Intelligent Information and Engineering Systems: MySQL Data Mining: Extending MySQL to Support Data Mining Primitives (Demo)

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Springer Berlin Heidelberg, 2010

Published in: Knowledge-Based and Intelligent Information and Engineering Systems (2010), Seite 438-444
Bonnici, Vincenzo; Ferro, Alfredo; Giugno, Rosalba; Pulvirenti, Alfredo; Shasha, Dennis

Pattern Recognition in Bioinformatics: Enhancing Graph Database Indexing by Suffix Tree Structure

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Springer Berlin Heidelberg, 2010

Published in: Pattern Recognition in Bioinformatics (2010), Seite 195-203
Ferro, Alfredo; Giugno, Rosalba; Puglisi, Piera Laura; Pulvirenti, Alfredo

Data Warehousing and Knowledge Discovery: BitCube: A Bottom-Up Cubing Engineering

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Springer Berlin Heidelberg, 2009

Published in: Data Warehousing and Knowledge Discovery (2009), Seite 189-203
Bonnici, Vincenzo; Russo, Francesco; Bombieri, Nicola; Pulvirenti, Alfredo; Giugno, Rosalba

Comprehensive Reconstruction and Visualization of Non-Coding Regulatory Networks in Human

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Frontiers Media SA, 2014

Published in: Frontiers in Bioengineering and Biotechnology, 2 (2014)
Ilaria Cosentini; Daniele Filippo Condorelli; Giorgio Locicero; Alfredo Ferro; Alfredo Pulvirenti; Vincenza Barresi; Salvatore Alaimo

Measuring cancer driving force of chromosomal aberrations through multi-layer Boolean implication networks

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2024

Published in: PLoS ONE, 19 (2024) 4
Cosentini, Ilaria; Condorelli, Daniele Filippo; Locicero, Giorgio; Ferro, Alfredo; Pulvirenti, Alfredo; Barresi, Vincenza; Alaimo, Salvatore

Measuring cancer driving force of chromosomal aberrations through multi-layer Boolean implication networks

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Public Library of Science (PLoS), 2024

Published in: PLOS ONE, 19 (2024) 4, Seite e0301591
Privitera, Grete Francesca; Alaimo, Salvatore; Caruso, Anna; Ferro, Alfredo; Forte, Stefano; Pulvirenti, Alfredo

TMBcalc: a computational pipeline for identifying pan-cancer Tumor Mutational Burden gene signatures

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Frontiers Media SA, 2024

Published in: Frontiers in Genetics, 15 (2024)
Di Maria, Antonio; Alaimo, Salvatore; Bellomo, Lorenzo; Billeci, Fabrizio; Ferragina, Paolo; Ferro, Alfredo; Pulvirenti, Alfredo

BioTAGME: A Comprehensive Platform for Biological Knowledge Network Analysis

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Frontiers Media SA, 2022

Published in: Frontiers in Genetics, 13 (2022)
Pluchino, Alessandro; Burgio, Giulio; Rapisarda, Andrea; Biondo, Alessio Emanuele; Pulvirenti, Alfredo; Ferro, Alfredo; Giorgino, Toni

Exploring the role of interdisciplinarity in physics: Success, talent and luck

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Public Library of Science (PLoS), 2019

Published in: PLOS ONE, 14 (2019) 6, Seite e0218793
Aparo, Antonino; Bonnici, Vincenzo; Micale, Giovanni; Ferro, Alfredo; Shasha, Dennis; Pulvirenti, Alfredo; Giugno, Rosalba

Fast Subgraph Matching Strategies Based on Pattern-Only Heuristics

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Springer Science and Business Media LLC, 2019

Published in: Interdisciplinary Sciences: Computational Life Sciences, 11 (2019) 1, Seite 21-32
Alaimo, Salvatore; Di Maria, Antonio; Shasha, Dennis; Ferro, Alfredo; Pulvirenti, Alfredo

TACITuS: transcriptomic data collector, integrator, and selector on big data platform

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Springer Science and Business Media LLC, 2019

Published in: BMC Bioinformatics, 20 (2019) S9
Alaimo, Salvatore; Marceca, Gioacchino P.; Giugno, Rosalba; Ferro, Alfredo; Pulvirenti, Alfredo

Current Knowledge and Computational Techniques for Grapevine Meta-Omics Analysis

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Frontiers Media SA, 2018

Published in: Frontiers in Plant Science, 8 (2018)
Micale, Giovanni; Giugno, Rosalba; Ferro, Alfredo; Mongiovì, Misael; Shasha, Dennis; Pulvirenti, Alfredo

Fast analytical methods for finding significant labeled graph motifs

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Springer Science and Business Media LLC, 2018

Published in: Data Mining and Knowledge Discovery, 32 (2018) 2, Seite 504-531
Sardina, Davide S.; Micale, Giovanni; Ferro, Alfredo; Pulvirenti, Alfredo; Giugno, Rosalba

INBIA: a boosting methodology for proteomic network inference

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Springer Science and Business Media LLC, 2018

Published in: BMC Bioinformatics, 19 (2018) S7
Sardina, Davide S.; Alaimo, Salvatore; Ferro, Alfredo; Pulvirenti, Alfredo; Giugno, Rosalba

A novel computational method for inferring competing endogenous interactions

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Oxford University Press (OUP), 2016

Published in: Briefings in Bioinformatics (2016), Seite bbw084
Alaimo, Salvatore; Giugno, Rosalba; Acunzo, Mario; Veneziano, Dario; Ferro, Alfredo; Pulvirenti, Alfredo

Post-transcriptional knowledge in pathway analysis increases the accuracy of phenotypes classification

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Impact Journals, LLC, 2016

Published in: Oncotarget, 7 (2016) 34, Seite 54572-54582
Alaimo, Salvatore; Bonnici, Vincenzo; Cancemi, Damiano; Ferro, Alfredo; Giugno, Rosalba; Pulvirenti, Alfredo

DT-Web: a web-based application for drug-target interaction and drug combination prediction through domain-tuned network-based inference

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Springer Science and Business Media LLC, 2015

Published in: BMC Systems Biology, 9 (2015) S3
Privitera, Anna P.; Distefano, Rosario; Wefer, Hugo A.; Ferro, Alfredo; Pulvirenti, Alfredo; Giugno, Rosalba

OCDB: a database collecting genes, miRNAs and drugs for obsessive-compulsive disorder

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Oxford University Press (OUP), 2015

Published in: Database, 2015 (2015), Seite bav069
Gissi, Carmela; Romano, Paolo; Ferro, Alfredo; Giugno, Rosalba; Pulvirenti, Alfredo; Facchiano, Angelo; Helmer-Citterich, Manuela

Bioinformatics in Italy: BITS2012, the ninth annual meeting of the Italian Society of Bioinformatics

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Springer Science and Business Media LLC, 2013

Published in: BMC Bioinformatics, 14 (2013) S7

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