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Amid, Alon; Biancolin, David; Gonzalez, Abraham; Grubb, Daniel; Karandikar, Sagar; Liew, Harrison; Magyar, Albert; Mao, Howard; Ou, Albert; Pemberton, Nathan; Rigge, Paul; Schmidt, Colin; Wright, John; Zhao, Jerry; Shao, Yakun Sophia; Asanovic, Krste; Nikolic, BorivojeChipyard: Integrated Design, Simulation, and Implementation Framework for Custom SoCsView onlineSchließen
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Published in: IEEE Micro
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Karandikar, Sagar; Mao, Howard; Kim, Donggyu; Biancolin, David; Amid, Alon; Lee, Dayeol; Pemberton, Nathan; Amaro, Emmanuel; Schmidt, Colin; Chopra, Aditya; Huang, Qijing; Kovacs, Kyle; Nikolic, Borivoje; Katz, Randy Howard; Bachrach, Jonathan; Asanovic, KrsteFireSim: FPGA-Accelerated Cycle-Exact Scale-Out System Simulation in the Public CloudView onlineSchließen
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Published in: IEEE Micro
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Mentes, Anikó; Papp, Krisztián; Visontai, Dávid; Stéger, József; Csabai, István; Papp, Krisztián; Visontai, Dávid; Stéger, József; Cochrane, Guy; Rahman, Nadim; Cummins, Carla; Yuan, David Yu; Selvakumar, Sandeep; Mansurova, Milena; O’Cathail, Colman; Sokolov, Alexey; Thorne, Ross; Koopmans, Marion; Nieuwenhuijse, David; Oude-Munnink, Bas; Worp, Nathalie; Amid, Clara; Csabai, István; Medgyes-Horváth, Anna;Identification of mutations in SARS-CoV-2 PCR primer regionsView onlineSchließen
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Published in: Scientific Reports
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Pipek, Orsolya Anna; Medgyes-Horváth, Anna; Stéger, József; Papp, Krisztián; Visontai, Dávid; Koopmans, Marion; Nieuwenhuijse, David; Oude Munnink, Bas B.; Cochrane, Guy; Rahman, Nadim; Cummins, Carla; Yuan, David Yu; Selvakumar, Sandeep; Mansurova, Milena; O’Cathail, Colman; Sokolov, Alexey; Thorne, Ross; Worp, Nathalie; Amid, Clara; Csabai, IstvánSystematic detection of co-infection and intra-host recombination in more than 2 million global SARS-CoV-2 samplesView onlineSchließen
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Published in: Nature Communications
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Ismail, Amid I.; Tellez, Marisol; Pitts, Nigel B.; Ekstrand, Kim R.; Ricketts, David; Longbottom, Christopher; Eggertsson, Hafsteinn; Deery, Christopher; Fisher, Julian; Young, Douglas A.; Featherstone, John D. B.; Evans, Wendell; Zeller, Gregory G.; Zero, Domenick; Martignon, Stefania; Fontana, Margherita; Zandona, AndreaCaries management pathways preserve dental tissues and promote oral healthView onlineSchließen
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Published in: Community Dentistry and Oral Epidemiology
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Rahman, Nadim; O'Cathail, Colman; Zyoud, Ahmad; Sokolov, Alexey; Oude Munnink, Bas; Grüning, Björn; Cummins, Carla; Amid, Clara; Nieuwenhuijse, David F.; Visontai, Dávid; Yuan, David Yu; Gupta, Dipayan; Prasad, Divyae K.; Gulyás, Gábor Máté; Rinck, Gabriele; McKinnon, Jasmine; Rajan, Jeena; Knaggs, Jeff; Skiby, Jeffrey Edward; Stéger, József; Szarvas, Judit; Gueye, Khadim; Papp, Krisztián; Hoek, Maarten; [...]Mobilisation and analyses of publicly available SARS-CoV-2 data for pandemic responsesView onlineSchließen
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Published in: Microbial Genomics
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Amid, Clara; Pakseresht, Nima; Silvester, Nicole; Jayathilaka, Suran; Lund, Ole; Dynovski, Lukasz D; Pataki, Bálint Á; Visontai, Dávid; Xavier, Basil Britto; Alako, Blaise T F; Belka, Ariane; Cisneros, Jose L B; Cotten, Matthew; Haringhuizen, George B; Harrison, Peter W; Höper, Dirk; Holt, Sam; Hundahl, Camilla; Hussein, Abdulrahman; Kaas, Rolf S; Liu, Xin; Leinonen, Rasko; Malhotra-Kumar, Surbhi; Nieuwenhuijse, David F; [...]The COMPARE Data HubsView onlineSchließen
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Published in: Database
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Pruitt, Kim D.; Harrow, Jennifer; Harte, Rachel A.; Wallin, Craig; Diekhans, Mark; Maglott, Donna R.; Searle, Steve; Farrell, Catherine M.; Loveland, Jane E.; Ruef, Barbara J.; Hart, Elizabeth; Suner, Marie-Marthe; Landrum, Melissa J.; Aken, Bronwen; Ayling, Sarah; Baertsch, Robert; Fernandez-Banet, Julio; Cherry, Joshua L.; Curwen, Val; DiCuccio, Michael; Kellis, Manolis; Lee, Jennifer; Lin, Michael F.; Schuster, Michael; [...]The consensus coding sequence (CCDS) project: Identifying a common protein-coding gene set for the human and mouse genomesView onlineSchließen
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Published in: Genome Research
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Dawson, Harry D; Loveland, Jane E; Pascal, Géraldine; Gilbert, James GR; Uenishi, Hirohide; Mann, Katherine M; Sang, Yongming; Zhang, Jie; Carvalho-Silva, Denise; Hunt, Toby; Hardy, Matthew; Hu, Zhiliang; Zhao, Shu-Hong; Anselmo, Anna; Shinkai, Hiroki; Chen, Celine; Badaoui, Bouabid; Berman, Daniel; Amid, Clara; Kay, Mike; Lloyd, David; Snow, Catherine; Morozumi, Takeya; Cheng, Ryan Pei-Yen; [...]Structural and functional annotation of the porcine immunomeView onlineSchließen
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Published in: BMC Genomics
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Roux, Simon; Adriaenssens, Evelien M; Dutilh, Bas E; Koonin, Eugene V; Kropinski, Andrew M; Krupovic, Mart; Kuhn, Jens H; Lavigne, Rob; Brister, J Rodney; Varsani, Arvind; Amid, Clara; Aziz, Ramy K; Bordenstein, Seth R; Bork, Peer; Breitbart, Mya; Cochrane, Guy R; Daly, Rebecca A; Desnues, Christelle; Duhaime, Melissa B; Emerson, Joanne B; Enault, François; Fuhrman, Jed A; Hingamp, Pascal; Hugenholtz, Philip; [...]Minimum Information about an Uncultivated Virus Genome (MIUViG)View onlineSchließen
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Published in: Nature Biotechnology
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MacArthur, Daniel G.; Balasubramanian, Suganthi; Frankish, Adam; Huang, Ni; Morris, James; Walter, Klaudia; Jostins, Luke; Habegger, Lukas; Pickrell, Joseph K.; Montgomery, Stephen B.; Albers, Cornelis A.; Zhang, Zhengdong D.; Conrad, Donald F.; Lunter, Gerton; Zheng, Hancheng; Ayub, Qasim; DePristo, Mark A.; Banks, Eric; Hu, Min; Handsaker, Robert E.; Rosenfeld, Jeffrey A.; Fromer, Menachem; Jin, Mike; Mu, Xinmeng Jasmine; [...]A Systematic Survey of Loss-of-Function Variants in Human Protein-Coding GenesView onlineSchließen
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Published in: Science
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Hendriksen, Rene S.; Munk, Patrick; Njage, Patrick; van Bunnik, Bram; McNally, Luke; Lukjancenko, Oksana; Röder, Timo; Nieuwenhuijse, David; Pedersen, Susanne Karlsmose; Kjeldgaard, Jette; Kaas, Rolf S.; Clausen, Philip Thomas Lanken Conradsen; Vogt, Josef Korbinian; Leekitcharoenphon, Pimlapas; van de Schans, Milou G. M.; Zuidema, Tina; de Roda Husman, Ana Maria; Rasmussen, Simon; Petersen, Bent; Bego, Artan; Rees, Catherine; Cassar, Susan; Coventry, Kris; Collignon, Peter; [...]Global monitoring of antimicrobial resistance based on metagenomics analyses of urban sewageView onlineSchließen
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Published in: Nature Communications
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Abbasi, Rasha; Ackermann, Markus; Adams, Jenni; Aggarwal, Nakul; Aguilar, Juanan; Ahlers, Markus; Ahrens, Maryon; Alameddine, Jean-Marco; Alves Junior, Antonio Augusto; Amin, Najia Moureen Binte; Andeen, Karen; Anderson, Tyler; Anton, Gisela; Argüelles, Carlos; Ashida, Yosuke; Athanasiadou, Sofia; Axani, Spencer; Bai, Xinhua; Balagopal V, Aswathi; Baricevic, Moreno; Barwick, Steve; Basu, Vedant; Bay, Ryan; Beatty, James; [...]In situ estimation of ice crystal properties at the South Pole using LED calibration data from the IceCube Neutrino ObservatoryView onlineSchließen
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Published in: The Cryosphere
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Aartsen, Mark; Ackermann, Markus; Adams, Jenni; Aguilar, Juan Antonio; Ahlers, Markus; Ahrens, Maryon; Al Samarai, Imen; Altmann, David; Andeen, Karen; Anderson, Tyler; Ansseau, Isabelle; Anton, Gisela; Argüelles, Carlos; Auffenberg, Jan; Axani, Spencer; Bagherpour, Hadis; Bai, Xinhua; Barron, Jared; Barwick, Steve; Baum, Volker; Bay, Ryan; Beatty, James; Becker, Karl Heinz; Tjus, Julia; [...]Multimessenger observations of a flaring blazar coincident with high-energy neutrino IceCube-170922AView onlineSchließen
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Published in: Science