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  1. Nickbakhsh, Sema; Hughes, Joseph; Christofidis, Nicolaos; Griffiths, Emily; Shaaban, Sharif; Enright, Jessica; Smollett, Katherine; Nomikou, Kyriaki; Palmalux, Natasha; Tong, Lily; Carmichael, Stephen; Sreenu, Vattipally B.; Orton, Richard; Goldstein, Emily J.; Tomb, Rachael M.; Robson, Samuel C.; Connor, Thomas R.; Loman, Nicholas J.; Golubchik, Tanya; Nunez, Rocio T. Martinez; Bonsall, David; Rambaut, Andrew; Snell, Luke B.; Livett, Rich; [...]

    Genomic epidemiology of SARS-CoV-2 in a university outbreak setting and implications for public health planning

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    Springer Science and Business Media LLC, 2022

    Published in: Scientific Reports

  2. Eales, Oliver; Page, Andrew J.; de Oliveira Martins, Leonardo; Wang, Haowei; Bodinier, Barbara; Haw, David; Jonnerby, Jakob; Atchison, Christina; Robson, Samuel C.; Connor, Thomas R.; Loman, Nicholas J.; Golubchik, Tanya; Nunez, Rocio T. Martinez; Bonsall, David; Rambaut, Andrew; Snell, Luke B.; Livett, Rich; Ludden, Catherine; Corden, Sally; Nastouli, Eleni; Nebbia, Gaia; Johnston, Ian; Lythgoe, Katrina; Torok, M. Estee; [...]

    SARS-CoV-2 lineage dynamics in England from September to November 2021: high diversity of Delta sub-lineages and increased transmissibility of AY.4.2

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    Springer Science and Business Media LLC, 2022

    Published in: BMC Infectious Diseases

  3. Graham, Mark S; Sudre, Carole H; May, Anna; Antonelli, Michela; Murray, Benjamin; Varsavsky, Thomas; Kläser, Kerstin; Canas, Liane S; Molteni, Erika; Modat, Marc; Drew, David A; Nguyen, Long H; Polidori, Lorenzo; Selvachandran, Somesh; Hu, Christina; Capdevila, Joan; Hammers, Alexander; Chan, Andrew T; Wolf, Jonathan; Spector, Tim D; Steves, Claire J; Ourselin, Sebastien; Koshy, Cherian; Ash, Amy; [...]

    Changes in symptomatology, reinfection, and transmissibility associated with the SARS-CoV-2 variant B.1.1.7: an ecological study

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    Elsevier BV, 2021

    Published in: The Lancet Public Health

  4. Volz, Erik; Hill, Verity; McCrone, John T.; Price, Anna; Jorgensen, David; O’Toole, Áine; Southgate, Joel; Johnson, Robert; Jackson, Ben; Nascimento, Fabricia F.; Rey, Sara M.; Nicholls, Samuel M.; Colquhoun, Rachel M.; da Silva Filipe, Ana; Shepherd, James; Pascall, David J.; Shah, Rajiv; Jesudason, Natasha; Li, Kathy; Jarrett, Ruth; Pacchiarini, Nicole; Bull, Matthew; Geidelberg, Lily; Siveroni, Igor; [...]

    Evaluating the Effects of SARS-CoV-2 Spike Mutation D614G on Transmissibility and Pathogenicity

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    Elsevier BV, 2021

    Published in: Cell

  5. de Silva, Thushan I.; Liu, Guihai; Lindsey, Benjamin B.; Dong, Danning; Moore, Shona C.; Hsu, Nienyun Sharon; Shah, Dhruv; Wellington, Dannielle; Mentzer, Alexander J.; Angyal, Adrienn; Brown, Rebecca; Parker, Matthew D.; Ying, Zixi; Yao, Xuan; Turtle, Lance; Dunachie, Susanna; Maini, Mala K.; Ogg, Graham; Knight, Julian C.; Peng, Yanchun; Rowland-Jones, Sarah L.; Dong, Tao; Aanensen, David M.; Abudahab, Khalil; [...]

    The impact of viral mutations on recognition by SARS-CoV-2 specific T cells

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    Elsevier BV, 2021

    Published in: iScience