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Schmidt, Thomas SB; Hayward, Matthew R; Coelho, Luis P; Li, Simone S; Costea, Paul I; Voigt, Anita Y; Wirbel, Jakob; Maistrenko, Oleksandr M; Alves, Renato JC; Bergsten, Emma; de Beaufort, Carine; Sobhani, Iradj; Heintz-Buschart, Anna; Sunagawa, Shinichi; Zeller, Georg; Wilmes, Paul; Bork, Peer

Extensive transmission of microbes along the gastrointestinal tract

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eLife Sciences Publications, Ltd, 2019

Published in: eLife, 8 (2019)
Roume, Hugo; Heintz-Buschart, Anna; Muller, Emilie E L; May, Patrick; Satagopam, Venkata P; Laczny, Cédric C; Narayanasamy, Shaman; Lebrun, Laura A; Hoopmann, Michael R; Schupp, James M; Gillece, John D; Hicks, Nathan D; Engelthaler, David M; Sauter, Thomas; Keim, Paul S; Moritz, Robert L; Wilmes, Paul

Comparative integrated omics: identification of key functionalities in microbial community-wide metabolic networks

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Springer Science and Business Media LLC, 2015

Published in: npj Biofilms and Microbiomes, 1 (2015) 1
McDonald, Elizabeth S.; Romanoff, Justin; Rahbar, Habib; Kitsch, Averi E.; Harvey, Sara M.; Whisenant, Jennifer G.; Yankeelov, Thomas E.; Moy, Linda; DeMartini, Wendy B.; Dogan, Basak E.; Yang, Wei T.; Wang, Lilian C.; Joe, Bonnie N.; Wilmes, Lisa J.; Hylton, Nola M.; Oh, Karen Y.; Tudorica, Luminita A.; Neal, Colleen H.; Malyarenko, Dariya I.; Comstock, Christopher E.; Schnall, Mitchell D.; Chenevert, Thomas L.; Partridge, Savannah C.

Mean Apparent Diffusion Coefficient Is a Sufficient Conventional Diffusion-weighted MRI Metric to Improve Breast MRI Diagnostic Performance: Results from the ECOG-ACRIN Cancer Research Group A6702 Diffusion Imaging Trial

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Radiological Society of North America (RSNA), 2021

Published in: Radiology, 298 (2021) 1, Seite 60-70
Bartelink, Imke H.; Prideaux, Brendan; Krings, Gregor; Wilmes, Lisa; Lee, Pei Rong Evelyn; Bo, Pan; Hann, Byron; Coppé, Jean-Philippe; Heditsian, Diane; Swigart-Brown, Lamorna; Jones, Ella F.; Magnitsky, Sergey; Keizer, Ron J; de Vries, Niels; Rosing, Hilde; Pawlowska, Nela; Thomas, Scott; Dhawan, Mallika; Aggarwal, Rahul; Munster, Pamela N.; Esserman, Laura J.; Ruan, Weiming; Wu, Alan H. B.; Yee, Douglas; [...]

Heterogeneous drug penetrance of veliparib and carboplatin measured in triple negative breast tumors

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Springer Science and Business Media LLC, 2017

Published in: Breast Cancer Research, 19 (2017) 1
Krebs, Alice; van Vugt-Lussenburg, Barbara M. A.; Waldmann, Tanja; Albrecht, Wiebke; Boei, Jan; ter Braak, Bas; Brajnik, Maja; Braunbeck, Thomas; Brecklinghaus, Tim; Busquet, Francois; Dinnyes, Andras; Dokler, Joh; Dolde, Xenia; Exner, Thomas E.; Fisher, Ciarán; Fluri, David; Forsby, Anna; Hengstler, Jan G.; Holzer, Anna-Katharina; Janstova, Zofia; Jennings, Paul; Kisitu, Jaffar; Kobolak, Julianna; Kumar, Manoj; [...]

The EU-ToxRisk method documentation, data processing and chemical testing pipeline for the regulatory use of new approach methods

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Springer Science and Business Media LLC, 2020

Published in: Archives of Toxicology, 94 (2020) 7, Seite 2435-2461
Marcos-Zambrano, Laura Judith; López-Molina, Víctor Manuel; Bakir-Gungor, Burcu; Frohme, Marcus; Karaduzovic-Hadziabdic, Kanita; Klammsteiner, Thomas; Ibrahimi, Eliana; Lahti, Leo; Loncar-Turukalo, Tatjana; Dhamo, Xhilda; Simeon, Andrea; Nechyporenko, Alina; Pio, Gianvito; Przymus, Piotr; Sampri, Alexia; Trajkovik, Vladimir; Lacruz-Pleguezuelos, Blanca; Aasmets, Oliver; Araujo, Ricardo; Anagnostopoulos, Ioannis; Aydemir, Önder; Berland, Magali; Calle, M. Luz; Ceci, Michelangelo; [...]

A toolbox of machine learning software to support microbiome analysis

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Frontiers Media SA, 2023

Published in: Frontiers in Microbiology, 14 (2023)
Onishi, Natsuko; Li, Wen; Newitt, David C.; Harnish, Roy J.; Strand, Fredrik; Nguyen, Alex Anh-Tu; Arasu, Vignesh Amal; Gibbs, Jessica; Jones, Ella F.; Wilmes, Lisa J.; Kornak, John; Joe, Bonnie N.; Price, Elissa R.; Ojeda-Fournier, Haydee; Eghtedari, Mohammad; Zamora, Kathryn W.; Woodard, Stefanie; Umphrey, Heidi R.; Nelson, Michael T.; Church, An L.; Bolan, Patrick J.; Kuritza, Theresa; Ward, Kathleen; Morley, Kevin; [...]

Breast MRI during Neoadjuvant Chemotherapy: Lack of Background Parenchymal Enhancement Suppression and Inferior Treatment Response

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Radiological Society of North America (RSNA), 2021

Published in: Radiology, 301 (2021) 2, Seite 295-308
Hendrix, James A.; Airey, David C.; Britton, Angela; Burke, Anna D.; Capone, George T.; Chavez, Ronelyn; Chen, Jacqueline; Chicoine, Brian; Costa, Alberto C. S.; Dage, Jeffrey L.; Doran, Eric; Esbensen, Anna; Evans, Casey L.; Faber, Kelley M.; Foroud, Tatiana M.; Hart, Sarah; Haugen, Kelsey; Head, Elizabeth; Hendrix, Suzanne; Hillerstrom, Hampus; Kishnani, Priya S.; Krell, Kavita; Ledesma, Duvia Lara; Lai, Florence; [...]

Cross-Sectional Exploration of Plasma Biomarkers of Alzheimer’s Disease in Down Syndrome: Early Data from the Longitudinal Investigation for Enhancing Down Syndrome Research (LIFE-DSR) Study

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MDPI AG, 2021

Published in: Journal of Clinical Medicine, 10 (2021) 9, Seite 1907
Li, Wen; Newitt, David C.; Gibbs, Jessica; Wilmes, Lisa J.; Jones, Ella F.; Arasu, Vignesh A.; Strand, Fredrik; Onishi, Natsuko; Nguyen, Alex Anh-Tu; Kornak, John; Joe, Bonnie N.; Price, Elissa R.; Ojeda-Fournier, Haydee; Eghtedari, Mohammad; Zamora, Kathryn W.; Woodard, Stefanie A.; Umphrey, Heidi; Bernreuter, Wanda; Nelson, Michael; Church, An Ly; Bolan, Patrick; Kuritza, Theresa; Ward, Kathleen; Morley, Kevin; [...]

Predicting breast cancer response to neoadjuvant treatment using multi-feature MRI: results from the I-SPY 2 TRIAL

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Springer Science and Business Media LLC, 2020

Published in: npj Breast Cancer, 6 (2020) 1
Mirzayi, Chloe; Renson, Audrey; Furlanello, Cesare; Sansone, Susanna-Assunta; Zohra, Fatima; Elsafoury, Shaimaa; Geistlinger, Ludwig; Kasselman, Lora J.; Eckenrode, Kelly; van de Wijgert, Janneke; Loughman, Amy; Marques, Francine Z.; MacIntyre, David A.; Arumugam, Manimozhiyan; Azhar, Rimsha; Beghini, Francesco; Bergstrom, Kirk; Bhatt, Ami; Bisanz, Jordan E.; Braun, Jonathan; Bravo, Hector Corrada; Buck, Gregory A.; Bushman, Frederic; Casero, David; [...]

Reporting guidelines for human microbiome research: the STORMS checklist

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Springer Science and Business Media LLC, 2021

Published in: Nature Medicine, 27 (2021) 11, Seite 1885-1892
Baldini, Federico; Hertel, Johannes; Sandt, Estelle; Thinnes, Cyrille C.; Neuberger-Castillo, Lorieza; Pavelka, Lukas; Betsou, Fay; Krüger, Rejko; Thiele, Ines; Aguayo, Gloria; Allen, Dominic; Ammerlann, Wim; Aurich, Maike; Balling, Rudi; Banda, Peter; Beaumont, Katy; Becker, Regina; Berg, Daniela; Binck, Sylvia; Bisdorff, Alexandre; Bobbili, Dheeraj; Brockmann, Kathrin; Calmes, Jessica; Castillo, Lorieza; [...]

Parkinson’s disease-associated alterations of the gut microbiome predict disease-relevant changes in metabolic functions

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Springer Science and Business Media LLC, 2020

Published in: BMC Biology, 18 (2020) 1
Acharya, Shubhra; Lumley, Andrew I.; Devaux, Yvan; Ali, Muhammad; Ramia, Nancy E.; Arena, Giuseppe; Balling, Rudi; Bassis, Michele; Becker, Regina; Boussaad, Ibrahim; Gawron, Piotr; Ghosh, Soumyabrata; Glaab, Enrico; De Lope, Elisa Gómez; Groues, Valentin; Grünewald, Anne; Gu, Wei; Heneka, Michael; Herzinger, Sascha; Lebioda, Jacek Jaroslaw; Jaroz, Yohan; Klopfenstein, Quentin; Landoulsi, Zied; Marques, Tainá M.; [...]

Cardiovascular history and risk of idiopathic Parkinson’s disease: a cross-sectional observational study

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Springer Science and Business Media LLC, 2024

Published in: BMC Neuroscience, 25 (2024) 1
de Lope, Elisa Gómez; Loo, Rebecca Ting Jiin; Rauschenberger, Armin; Ali, Muhammad; Pavelka, Lukas; Marques, Tainá M.; Gomes, Clarissa P. C.; Krüger, Rejko; Glaab, Enrico; Acharya, Geeta; Aguayo, Gloria; Alexandre, Myriam; Ali, Muhammad; Ammerlann, Wim; Arena, Giuseppe; Balling, Rudi; Bassis, Michele; Batutu, Roxane; Beaumont, Katy; Becker, Regina; Bellora, Camille; Berchem, Guy; Berg, Daniela; Bisdorff, Alexandre; [...]

Comprehensive blood metabolomics profiling of Parkinson’s disease reveals coordinated alterations in xanthine metabolism

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Springer Science and Business Media LLC, 2024

Published in: npj Parkinson's Disease, 10 (2024) 1
Pavelka, Lukas; Rauschenberger, Armin; Hemedan, Ahmed; Ostaszewski, Marek; Glaab, Enrico; Krüger, Rejko; Acharya, Geeta; Aguayo, Gloria; Alexandre, Myriam; Ali, Muhammad; Ammerlann, Wim; Balling, Rudi; Bassis, Michele; Beaumont, Katy; Becker, Regina; Bellora, Camille; Berchem, Guy; Berg, Daniela; Bisdorff, Alexandre; Brockmann, Kathrin; Calmes, Jessica; Castillo, Lorieza; Contesotto, Gessica; Arena, Giuseppe; [...]

Converging peripheral blood microRNA profiles in Parkinson's disease and progressive supranuclear palsy

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Oxford University Press (OUP), 2024

Published in: Brain Communications, 6 (2024) 3
Pachchek, Sinthuja; Landoulsi, Zied; Pavelka, Lukas; Schulte, Claudia; Buena-Atienza, Elena; Gross, Caspar; Hauser, Ann-Kathrin; Reddy Bobbili, Dheeraj; Casadei, Nicolas; May, Patrick; Krüger, Rejko; Acharya, Geeta; Aguayo, Gloria; Alexandre, Myriam; Ali, Muhammad; Ammerlann, Wim; Arena, Giuseppe; Balling, Rudi; Bassis, Michele; Batutu, Roxane; Beaumont, Katy; Becker, Regina; Bellora, Camille; Berchem, Guy; [...]

Accurate long-read sequencing identified GBA1 as major risk factor in the Luxembourgish Parkinson’s study

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Springer Science and Business Media LLC, 2023

Published in: npj Parkinson's Disease, 9 (2023) 1
Pachchek, Sinthuja; Landoulsi, Zied; Pavelka, Lukas; Schulte, Claudia; Buena-Atienza, Elena; Gross, Caspar; Hauser, Ann-Kathrin; Reddy Bobbili, Dheeraj; Casadei, Nicolas; May, Patrick; Krüger, Rejko; Acharya, Geeta; Aguayo, Gloria; Alexandre, Myriam; Ali, Muhammad; Ammerlann, Wim; Arena, Giuseppe; Balling, Rudi; Bassis, Michele; Batutu, Roxane; Beaumont, Katy; Becker, Regina; Bellora, Camille; Berchem, Guy; [...]

Author Correction: Accurate long-read sequencing identified GBA1 as major risk factor in the Luxembourgish Parkinson’s study

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Springer Science and Business Media LLC, 2023

Published in: npj Parkinson's Disease, 9 (2023) 1
Pavelka, L.; Rauschenberger, A.; Landoulsi, Z.; Pachchek, S.; May, P.; Glaab, E.; Krüger, R.; Acharya, Geeta; Aguayo, Gloria; Alexandre, Myriam; Ali, Muhammad; Allen, Dominic; Ammerlann, Wim; Balling, Rudi; Bassis, Michele; Beaumont, Katy; Becker, Regina; Bellora, Camille; Berchem, Guy; Berg, Daniela; Bisdorff, Alexandre; Brockmann, Kathrin; Calmes, Jessica; Castillo, Lorieza; [...]

Age at onset as stratifier in idiopathic Parkinson’s disease – effect of ageing and polygenic risk score on clinical phenotypes

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Springer Science and Business Media LLC, 2022

Published in: npj Parkinson's Disease, 8 (2022) 1
Pavelka, L.; Rauschenberger, A.; Landoulsi, Z.; Pachchek, S.; May, P.; Glaab, E.; Krüger, R.; Acharya, Geeta; Aguayo, Gloria; Alexandre, Myriam; Ali, Muhammad; Allen, Dominic; Ammerlann, Wim; Balling, Rudi; Bassis, Michele; Beaumont, Katy; Becker, Regina; Bellora, Camille; Berchem, Guy; Berg, Daniela; Bisdorff, Alexandre; Brockmann, Kathrin; Calmes, Jessica; Castillo, Lorieza; [...]

Publisher Correction: Age at onset as stratifier in idiopathic Parkinson’s disease – effect of ageing and polygenic risk score on clinical phenotypes

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Springer Science and Business Media LLC, 2022

Published in: npj Parkinson's Disease, 8 (2022) 1
Onishi, Natsuko; Bareng, Teffany Joy; Gibbs, Jessica; Li, Wen; Price, Elissa R.; Joe, Bonnie N.; Kornak, John; Esserman, Laura J.; Newitt, David C.; Hylton, Nola M.; Joe, Bonnie N.; Ojeda-Fournier, Haydee; Eghtedari, Mohammad; Zamora, Kathryn W.; Woodard, Stefanie; Umphrey, Heidi; Nelson, Michael; Church, An; Bolan, Patrick; Kuritza, Theresa; Ward, Kathleen; Morley, Kevin; Wolverton, Dulcy; Fountain, Kelly; [...]

Effect of Longitudinal Variation in Tumor Volume Estimation for MRI-guided Personalization of Breast Cancer Neoadjuvant Treatment

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Radiological Society of North America (RSNA), 2023

Published in: Radiology: Imaging Cancer, 5 (2023) 4
Ozlen, Hazal; Pichet Binette, Alexa; Köbe, Theresa; Meyer, Pierre-François; Gonneaud, Julie; St-Onge, Frédéric; Provost, Karine; Soucy, Jean-Paul; Rosa-Neto, Pedro; Breitner, John; Poirier, Judes; Villeneuve, Sylvia; Tam, Angela; Labonte, Anne; Pichet Binette, Alexa; Faubert, Anne-Marie; Mathieu, Axel; Madjar, Cecile; Carrier, Charles Edouard; Dansereau, Christian; Kazazian, Christina; Lepage, Claude; Picard, Cynthia; Maillet, David; [...]

Spatial Extent of Amyloid-β Levels and Associations With Tau-PET and Cognition

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American Medical Association (AMA), 2022

Published in: JAMA Neurology, 79 (2022) 10, Seite 1025

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