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  1. Novichkov, Pavel S; Kazakov, Alexey E; Ravcheev, Dmitry A; Leyn, Semen A; Kovaleva, Galina Y; Sutormin, Roman A; Kazanov, Marat D; Riehl, William; Arkin, Adam P; Dubchak, Inna; Rodionov, Dmitry A

    RegPrecise 3.0 – A resource for genome-scale exploration of transcriptional regulation in bacteria

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    Springer Science and Business Media LLC, 2013

    Published in: BMC Genomics

  2. Markowitz, V. M.; Ivanova, N. N.; Szeto, E.; Palaniappan, K.; Chu, K.; Dalevi, D.; Chen, I-M. A.; Grechkin, Y.; Dubchak, I.; Anderson, I.; Lykidis, A.; Mavromatis, K.; Hugenholtz, P.; Kyrpides, N. C.

    IMG/M: a data management and analysis system for metagenomes

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    Oxford University Press (OUP), 2007

    Published in: Nucleic Acids Research

  3. Kazakov, Alexey E.; Rajeev, Lara; Luning, Eric G.; Zane, Grant M.; Siddartha, Kavya; Rodionov, Dmitry A.; Dubchak, Inna; Arkin, Adam P.; Wall, Judy D.; Mukhopadhyay, Aindrila; Novichkov, Pavel S.

    New Family of Tungstate-Responsive Transcriptional Regulators in Sulfate-Reducing Bacteria

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    American Society for Microbiology, 2013

    Published in: Journal of Bacteriology

  4. Rodionov, Dmitry A; Novichkov, Pavel S; Stavrovskaya, Elena D; Rodionova, Irina A; Li, Xiaoqing; Kazanov, Marat D; Ravcheev, Dmitry A; Gerasimova, Anna V; Kazakov, Alexey E; Kovaleva, Galina; Permina, Elizabeth A; Laikova, Olga N; Overbeek, Ross; Romine, Margaret F; Fredrickson, James K; Arkin, Adam P; Dubchak, Inna; Osterman, Andrei L; Gelfand, Mikhail S

    Comparative genomic reconstruction of transcriptional networks controlling central metabolism in the Shewanella genus

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    Springer Science and Business Media LLC, 2011

    Published in: BMC Genomics

  5. De Val, Sarah; Chi, Neil C.; Meadows, Stryder M.; Minovitsky, Simon; Anderson, Joshua P.; Harris, Ian S.; Ehlers, Melissa L.; Agarwal, Pooja; Visel, Axel; Xu, Shan-Mei; Pennacchio, Len A.; Dubchak, Inna; Krieg, Paul A.; Stainier, Didier Y.R.; Black, Brian L.

    Combinatorial Regulation of Endothelial Gene Expression by Ets and Forkhead Transcription Factors

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    Elsevier BV, 2008

    Published in: Cell

  6. Belokon, Yuri N.; Maleyev, Victor I.; Vitt, Sergei V.; Ryzhov, Mikhail G.; Kondrashov, Yuri D.; Golubev, Sergei N.; Vauchskii, Yuri P.; Kazika, Anna I.; Novikova, Marina I.; Krasutskii, Pavel A.; Yurchenko, Aleksandr G.; Dubchak, Inna L.; Shklover, Valeri E.; Struchkov, Yuri T.; Bakhmutov, Vladimir I.; Belikov, Vasili M.

    Enantioselectivity of nickel(II) and copper(II) complexes of Schiff bases derived from amino acids and (S)-o-[(N-benzylprolyl)amino]-acetophenone or (S)-o-[(N-benzylprolyl)amino]benzaldehyde. Crystal and molecular structures of [Ni{(S)-bap-(S)-Val}] and [Cu{(S)-bap-(S)-Val}]

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    Royal Society of Chemistry (RSC), 1985

    Published in: Journal of the Chemical Society, Dalton Transactions

  7. Simoes-Silva, L.; Moreira-Rodrigues, M.; Quelhas-Santos, J.; Fernandes-Cerqueira, C.; Pestana, M.; Soares-Silva, I.; Sampaio-Maia, B.; Bankir, L.; Leopold, F.; Nadine, B.; Roussel, R.; Balkau, B.; Michel, M.; Daniel, B.; Kurnatowska, I.; Grzelak, P.; Kaczmarska, M.; Masajtis-Zagajewska, A.; Stefanczyk, L.; Nowicki, M.; Niemczyk, S.; Niemczyk, L.; Szamotulska, K.; Bartoszewicz, Z.; [...]

    Hormones

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    Oxford University Press (OUP), 2012

    Published in: Nephrology Dialysis Transplantation

  8. Paterson, Andrew H.; Bowers, John E.; Bruggmann, Rémy; Dubchak, Inna; Grimwood, Jane; Gundlach, Heidrun; Haberer, Georg; Hellsten, Uffe; Mitros, Therese; Poliakov, Alexander; Schmutz, Jeremy; Spannagl, Manuel; Tang, Haibao; Wang, Xiyin; Wicker, Thomas; Bharti, Arvind K.; Chapman, Jarrod; Feltus, F. Alex; Gowik, Udo; Grigoriev, Igor V.; Lyons, Eric; Maher, Christopher A.; Martis, Mihaela; Narechania, Apurva; [...]

    The Sorghum bicolor genome and the diversification of grasses

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    Springer Science and Business Media LLC, 2009

    Published in: Nature

  9. Richards, Stephen; Liu, Yue; Bettencourt, Brian R.; Hradecky, Pavel; Letovsky, Stan; Nielsen, Rasmus; Thornton, Kevin; Hubisz, Melissa J.; Chen, Rui; Meisel, Richard P.; Couronne, Olivier; Hua, Sujun; Smith, Mark A.; Zhang, Peili; Liu, Jing; Bussemaker, Harmen J.; van Batenburg, Marinus F.; Howells, Sally L.; Scherer, Steven E.; Sodergren, Erica; Matthews, Beverly B.; Crosby, Madeline A.; Schroeder, Andrew J.; Ortiz-Barrientos, Daniel; [...]

    Comparative genome sequencing ofDrosophila pseudoobscura: Chromosomal, gene, andcis-element evolution

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    Cold Spring Harbor Laboratory, 2005

    Published in: Genome Research

  10. Worden, Alexandra Z.; Lee, Jae-Hyeok; Mock, Thomas; Rouzé, Pierre; Simmons, Melinda P.; Aerts, Andrea L.; Allen, Andrew E.; Cuvelier, Marie L.; Derelle, Evelyne; Everett, Meredith V.; Foulon, Elodie; Grimwood, Jane; Gundlach, Heidrun; Henrissat, Bernard; Napoli, Carolyn; McDonald, Sarah M.; Parker, Micaela S.; Rombauts, Stephane; Salamov, Aasf; Von Dassow, Peter; Badger, Jonathan H.; Coutinho, Pedro M.; Demir, Elif; Dubchak, Inna; [...]

    Green Evolution and Dynamic Adaptations Revealed by Genomes of the Marine Picoeukaryotes Micromonas

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    American Association for the Advancement of Science (AAAS), 2009

    Published in: Science

  11. Worden, Alexandra Z.; Lee, Jae-Hyeok; Mock, Thomas; Rouzé, Pierre; Simmons, Melinda P.; Aerts, Andrea L.; Allen, Andrew E.; Cuvelier, Marie L.; Derelle, Evelyne; Everett, Meredith V.; Foulon, Elodie; Grimwood, Jane; Gundlach, Heidrun; Henrissat, Bernard; Napoli, Carolyn; McDonald, Sarah M.; Parker, Micaela S.; Rombauts, Stephane; Salamov, Aasf; Von Dassow, Peter; Badger, Jonathan H.; Coutinho, Pedro M.; Demir, Elif; Dubchak, Inna; [...]

    Green Evolution and Dynamic Adaptations Revealed by Genomes of the Marine Picoeukaryotes Micromonas

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    American Association for the Advancement of Science, 2009

    Published in: Science

  12. Tuskan, G. A.; DiFazio, S.; Jansson, S.; Bohlmann, J.; Grigoriev, I.; Hellsten, U.; Putnam, N.; Ralph, S.; Rombauts, S.; Salamov, A.; Schein, J.; Sterck, L.; Aerts, A.; Bhalerao, R. R.; Bhalerao, R. P.; Blaudez, D.; Boerjan, W.; Brun, A.; Brunner, A.; Busov, V.; Campbell, M.; Carlson, J.; Chalot, M.; Chapman, J.; [...]

    The Genome of Black Cottonwood, Populus trichocarpa (Torr. & Gray)

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    American Association for the Advancement of Science (AAAS), 2006

    Published in: Science

  13. Tuskan, G. A.; DiFazio, S.; Jansson, S.; Bohlmann, J.; Grigoriev, I.; Hellsten, U.; Putnam, N.; Ralph, S.; Rombauts, S.; Salamov, A.; Schein, J.; Sterck, L.; Aerts, A.; Bhalerao, R. R.; Bhalerao, R. P.; Blaudez, D.; Boerjan, W.; Brun, A.; Brunner, A.; Busov, V.; Campbell, M.; Carlson, J.; Chalot, M.; Chapman, J.; [...]

    The Genome of Black Cottonwood, Populus trichocarpa (Torr. & Gray)

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    American Association for the Advancement of Science, 2006

    Published in: Science

  14. Arkin, Adam P; Cottingham, Robert W; Henry, Christopher S; Harris, Nomi L; Stevens, Rick L; Maslov, Sergei; Dehal, Paramvir; Ware, Doreen; Perez, Fernando; Canon, Shane; Sneddon, Michael W; Henderson, Matthew L; Riehl, William J; Murphy-Olson, Dan; Chan, Stephen Y; Kamimura, Roy T; Kumari, Sunita; Drake, Meghan M; Brettin, Thomas S; Glass, Elizabeth M; Chivian, Dylan; Gunter, Dan; Weston, David J; Allen, Benjamin H; [...]

    KBase: The United States Department of Energy Systems Biology Knowledgebase

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    Springer Science and Business Media LLC, 2018

    Published in: Nature Biotechnology

  15. Myburg, Alexander A.; Grattapaglia, Dario; Tuskan, Gerald A.; Hellsten, Uffe; Hayes, Richard D.; Grimwood, Jane; Jenkins, Jerry; Lindquist, Erika; Tice, Hope; Bauer, Diane; Goodstein, David M.; Dubchak, Inna; Poliakov, Alexandre; Mizrachi, Eshchar; Kullan, Anand R. K.; Hussey, Steven G.; Pinard, Desre; van der Merwe, Karen; Singh, Pooja; van Jaarsveld, Ida; Silva-Junior, Orzenil B.; Togawa, Roberto C.; Pappas, Marilia R.; Faria, Danielle A.; [...]

    The genome of Eucalyptus grandis

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    Springer Science and Business Media LLC, 2014

    Published in: Nature

  16. Grimwood, Jane; Gordon, Laurie A.; Olsen, Anne; Terry, Astrid; Schmutz, Jeremy; Lamerdin, Jane; Hellsten, Uffe; Goodstein, David; Couronne, Olivier; Tran-Gyamfi, Mary; Aerts, Andrea; Altherr, Michael; Ashworth, Linda; Bajorek, Eva; Black, Stacey; Branscomb, Elbert; Caenepeel, Sean; Carrano, Anthony; Caoile, Chenier; Man Chan, Yee; Christensen, Mari; Cleland, Catherine A.; Copeland, Alex; Dalin, Eileen; [...]

    The DNA sequence and biology of human chromosome 19

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    Springer Science and Business Media LLC, 2004

    Published in: Nature

  17. Gibbs, Richard A.; Weinstock, George M.; Metzker, Michael L.; Muzny, Donna M.; Sodergren, Erica J.; Scherer, Steven; Scott, Graham; Steffen, David; Worley, Kim C.; Burch, Paula E.; Okwuonu, Geoffrey; Hines, Sandra; Lewis, Lora; DeRamo, Christine; Delgado, Oliver; Dugan-Rocha, Shannon; Miner, George; Morgan, Margaret; Hawes, Alicia; Gill, Rachel; Holt, Celera Robert A.; Adams, Mark D.; Amanatides, Peter G.; Baden-Tillson, Holly; [...]

    Genome sequence of the Brown Norway rat yields insights into mammalian evolution

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    Springer Science and Business Media LLC, 2004

    Published in: Nature