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Pietzsch, Tobias; Preibisch, Stephan; Tomančák, Pavel; Saalfeld, Stephan

ImgLib2—generic image processing in Java

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Oxford University Press (OUP), 2012

Published in: Bioinformatics
Arunachalam, Manonmani; Jayasurya, Karthik; Tomancak, Pavel; Ohler, Uwe

An alignment-free method to identify candidate orthologous enhancers in multiple Drosophila genomes

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Oxford University Press (OUP), 2010

Published in: Bioinformatics
Saalfeld, Stephan; Cardona, Albert; Hartenstein, Volker; Tomančák, Pavel

As-rigid-as-possible mosaicking and serial section registration of large ssTEM datasets

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Oxford University Press (OUP), 2010

Published in: Bioinformatics
Preibisch, Stephan; Saalfeld, Stephan; Schindelin, Johannes; Tomancak, Pavel

Software for bead-based registration of selective plane illumination microscopy data

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Springer Science and Business Media LLC, 2010

Published in: Nature Methods
Preibisch, Stephan; Saalfeld, Stephan; Rohlfing, Torsten; Tomancak, Pavel

Bead-based mosaicing of single plane illumination microscopy images using geometric local descriptor matching

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SPIE, 2009

Published in: SPIE Proceedings
Saalfeld, Stephan; Cardona, Albert; Hartenstein, Volker; Tomančák, Pavel

CATMAID: collaborative annotation toolkit for massive amounts of image data

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Oxford University Press (OUP), 2009

Published in: Bioinformatics
Preibisch, Stephan; Rohlfing, Torsten; Hasak, Michael P.; Tomancak, Pavel

Mosaicing of single plane illumination microscopy images using groupwise registration and fast content-based image fusion

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SPIE, 2008

Published in: SPIE Proceedings
Magalhães, Tiago R; Palmer, Jessica; Tomancak, Pavel; Pollard, Katherine S

Transcriptional control in embryonic Drosophila midline guidance assessed through a whole genome approach

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Springer Science and Business Media LLC, 2007

Published in: BMC Neuroscience
Tomancak, Pavel; Rubin, Gerald M.; Lai, Eric C.

Drosophila Micrornas Exhibit Diverse Spatial Expression Patterns During Embryonic Development

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National Academy of Sciences, 2005

Published in: Proceedings of the National Academy of Sciences of the United States of America
Tomancak, Pavel; Guichet, Antoine; Zavorszky, Peter; Ephrussi, Anne

Oocyte polarity depends on regulation of gurken by Vasa

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The Company of Biologists, 1998

Published in: Development
Kožusznik, Jan; Bainar, Petr; Klímová, Jana; Krumnikl, Michal; Moravec, Pavel; Svatoň, Václav; Tomančák, Pavel

SPIM workflow manager for HPC

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Oxford University Press (OUP), 2019

Published in: Bioinformatics
Krumnikl, Michal; Bainar, Petr; Klímová, Jana; Kožusznik, Jan; Moravec, Pavel; Svatoň, Václav; Tomančák, Pavel

Computer Information Systems and Industrial Management: SciJava Interface for Parallel Execution in the ImageJ Ecosystem

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Springer International Publishing, 2018

Published in: Computer Information Systems and Industrial Management
Jambor, Helena; Surendranath, Vineeth; Kalinka, Alex T; Mejstrik, Pavel; Saalfeld, Stephan; Tomancak, Pavel

Systematic imaging reveals features and changing localization of mRNAs in Drosophila development

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eLife Sciences Publications, Ltd, 2015

Published in: eLife
Arzt, Matthias; Deschamps, Joran; Schmied, Christopher; Pietzsch, Tobias; Schmidt, Deborah; Tomancak, Pavel; Haase, Robert; Jug, Florian

LABKIT: Labeling and Segmentation Toolkit for Big Image Data

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Frontiers Media SA, 2022

Published in: Frontiers in Computer Science
Girstmair, Johannes; Moon, HongKee; Brillard, Charlène; Haase, Robert; Tomancak, Pavel

Time to Upgrade: A New OpenSPIM Guide to Build and Operate Advanced OpenSPIM Configurations

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Wiley, 2022

Published in: Advanced Biology
Lalit, Manan; Handberg-Thorsager, Mette; Hsieh, Yu-Wen; Jug, Florian; Tomancak, Pavel

Computer Vision – ECCV 2020 Workshops: Registration of Multi-modal Volumetric Images by Establishing Cell Correspondence

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Springer International Publishing, 2020

Published in: Computer Vision – ECCV 2020 Workshops
Ueda, Hiroki R.; Ertürk, Ali; Chung, Kwanghun; Gradinaru, Viviana; Chédotal, Alain; Tomancak, Pavel; Keller, Philipp J.

Publisher Correction: Tissue clearing and its applications in neuroscience

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Springer Science and Business Media LLC, 2020

Published in: Nature Reviews Neuroscience
Ueda, Hiroki R.; Ertürk, Ali; Chung, Kwanghun; Gradinaru, Viviana; Chédotal, Alain; Tomancak, Pavel; Keller, Philipp J.

Tissue clearing and its applications in neuroscience

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Springer Science and Business Media LLC, 2020

Published in: Nature Reviews Neuroscience
Münster, Stefan; Jain, Akanksha; Mietke, Alexander; Pavlopoulos, Anastasios; Grill, Stephan W.; Tomancak, Pavel

Attachment of the blastoderm to the vitelline envelope affects gastrulation of insects

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Springer Science and Business Media LLC, 2019

Published in: Nature
Münster, Stefan; Jain, Akanksha; Mietke, Alexander; Pavlopoulos, Anastasios; Grill, Stephan W.; Tomancak, Pavel

Publisher Correction: Attachment of the blastoderm to the vitelline envelope affects gastrulation of insects

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Springer Science and Business Media LLC, 2019

Published in: Nature

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