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Alexandrov, Ludmil B.; Kim, Jaegil; Haradhvala, Nicholas J.; Huang, Mi Ni; Tian Ng, Alvin Wei; Wu, Yang; Boot, Arnoud; Covington, Kyle R.; Gordenin, Dmitry A.; Bergstrom, Erik N.; Islam, S. M. Ashiqul; Lopez-Bigas, Nuria; Klimczak, Leszek J.; McPherson, John R.; Morganella, Sandro; Sabarinathan, Radhakrishnan; Wheeler, David A.; Mustonen, Ville; Alexandrov, Ludmil B.; Bergstrom, Erik N.; Boot, Arnoud; Boutros, Paul; Chan, Kin; Covington, Kyle R.; [...]The repertoire of mutational signatures in human cancerView onlineSchließen
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Published in: Nature
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Liu, Enchi; Schmidt, Mark E.; Margolin, Richard; Sperling, Reisa; Koeppe, Robert; Mason, Neale S.; Klunk, William E.; Mathis, Chester A.; Salloway, Stephen; Fox, Nick C.; Hill, Derek L.; Les, Andrea S.; Collins, Peter; Gregg, Keith M.; Di, Jianing; Lu, Yuan; Tudor, I. Cristina; Wyman, Bradley T.; Booth, Kevin; Broome, Stephanie; Yuen, Eric; Grundman, Michael; Brashear, H. Robert; Salloway, S.; [...]Amyloid-β 11 C-PiB-PET imaging results from 2 randomized bapineuzumab phase 3 AD trialsView onlineSchließen
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Published in: Neurology
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Rheinbay, Esther; Nielsen, Morten Muhlig; Abascal, Federico; Wala, Jeremiah A.; Shapira, Ofer; Tiao, Grace; Hornshøj, Henrik; Hess, Julian M.; Juul, Randi Istrup; Lin, Ziao; Feuerbach, Lars; Sabarinathan, Radhakrishnan; Madsen, Tobias; Kim, Jaegil; Mularoni, Loris; Shuai, Shimin; Lanzós, Andrés; Herrmann, Carl; Maruvka, Yosef E.; Shen, Ciyue; Amin, Samirkumar B.; Bandopadhayay, Pratiti; Bertl, Johanna; Boroevich, Keith A.; [...]Author Correction: Analyses of non-coding somatic drivers in 2,658 cancer whole genomesView onlineSchließen
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Published in: Nature
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Rheinbay, Esther; Nielsen, Morten Muhlig; Abascal, Federico; Wala, Jeremiah A.; Shapira, Ofer; Tiao, Grace; Hornshøj, Henrik; Hess, Julian M.; Juul, Randi Istrup; Lin, Ziao; Feuerbach, Lars; Sabarinathan, Radhakrishnan; Madsen, Tobias; Kim, Jaegil; Mularoni, Loris; Shuai, Shimin; Lanzós, Andrés; Herrmann, Carl; Maruvka, Yosef E.; Shen, Ciyue; Amin, Samirkumar B.; Bandopadhayay, Pratiti; Bertl, Johanna; Boroevich, Keith A.; [...]Analyses of non-coding somatic drivers in 2,658 cancer whole genomesView onlineSchließen
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Published in: Nature
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Bailey, Matthew H.; Meyerson, William U.; Dursi, Lewis Jonathan; Wang, Liang-Bo; Dong, Guanlan; Liang, Wen-Wei; Weerasinghe, Amila; Li, Shantao; Li, Yize; Kelso, Sean; Akbani, Rehan; Anur, Pavana; Bailey, Matthew H.; Buchanan, Alex; Chiotti, Kami; Covington, Kyle; Creason, Allison; Ding, Li; Ellrott, Kyle; Fan, Yu; Foltz, Steven; Getz, Gad; Hale, Walker; Haussler, David; [...]Author Correction: Retrospective evaluation of whole exome and genome mutation calls in 746 cancer samplesView onlineSchließen
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Published in: Nature Communications
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Bailey, Matthew H.; Meyerson, William U.; Dursi, Lewis Jonathan; Wang, Liang-Bo; Dong, Guanlan; Liang, Wen-Wei; Weerasinghe, Amila; Li, Shantao; Li, Yize; Kelso, Sean; Akbani, Rehan; Anur, Pavana; Bailey, Matthew H.; Buchanan, Alex; Chiotti, Kami; Covington, Kyle; Creason, Allison; Ding, Li; Ellrott, Kyle; Fan, Yu; Foltz, Steven; Getz, Gad; Hale, Walker; Haussler, David; [...]Retrospective evaluation of whole exome and genome mutation calls in 746 cancer samplesView onlineSchließen
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Published in: Nature Communications
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Carlevaro-Fita, Joana; Lanzós, Andrés; Feuerbach, Lars; Hong, Chen; Mas-Ponte, David; Pedersen, Jakob Skou; Abascal, Federico; Amin, Samirkumar B.; Bader, Gary D.; Barenboim, Jonathan; Beroukhim, Rameen; Bertl, Johanna; Boroevich, Keith A.; Brunak, Søren; Campbell, Peter J.; Carlevaro-Fita, Joana; Chakravarty, Dimple; Chan, Calvin Wing Yiu; Chen, Ken; Choi, Jung Kyoon; Deu-Pons, Jordi; Dhingra, Priyanka; Diamanti, Klev; Feuerbach, Lars; [...]Author Correction: Cancer LncRNA Census reveals evidence for deep functional conservation of long noncoding RNAs in tumorigenesisView onlineSchließen
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Published in: Communications Biology
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Shuai, Shimin; Abascal, Federico; Amin, Samirkumar B.; Bader, Gary D.; Bandopadhayay, Pratiti; Barenboim, Jonathan; Beroukhim, Rameen; Bertl, Johanna; Boroevich, Keith A.; Brunak, Søren; Campbell, Peter J.; Carlevaro-Fita, Joana; Chakravarty, Dimple; Chan, Calvin Wing Yiu; Chen, Ken; Choi, Jung Kyoon; Deu-Pons, Jordi; Dhingra, Priyanka; Diamanti, Klev; Feuerbach, Lars; Fink, J. Lynn; Fonseca, Nuno A.; Frigola, Joan; Gambacorti-Passerini, Carlo; [...]Author Correction: Combined burden and functional impact tests for cancer driver discovery using DriverPowerView onlineSchließen
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Published in: Nature Communications
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Paczkowska, Marta; Barenboim, Jonathan; Sintupisut, Nardnisa; Fox, Natalie S.; Zhu, Helen; Abd-Rabbo, Diala; Mee, Miles W.; Boutros, Paul C.; Abascal, Federico; Amin, Samirkumar B.; Bader, Gary D.; Beroukhim, Rameen; Bertl, Johanna; Boroevich, Keith A.; Brunak, Søren; Campbell, Peter J.; Carlevaro-Fita, Joana; Chakravarty, Dimple; Chan, Calvin Wing Yiu; Chen, Ken; Choi, Jung Kyoon; Deu-Pons, Jordi; Dhingra, Priyanka; Diamanti, Klev; [...]Author Correction: Integrative pathway enrichment analysis of multivariate omics dataView onlineSchließen
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Published in: Nature Communications
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Reyna, Matthew A.; Haan, David; Paczkowska, Marta; Verbeke, Lieven P. C.; Vazquez, Miguel; Kahraman, Abdullah; Pulido-Tamayo, Sergio; Barenboim, Jonathan; Wadi, Lina; Dhingra, Priyanka; Shrestha, Raunak; Getz, Gad; Lawrence, Michael S.; Pedersen, Jakob Skou; Rubin, Mark A.; Wheeler, David A.; Brunak, Søren; Izarzugaza, Jose M. G.; Khurana, Ekta; Marchal, Kathleen; von Mering, Christian; Sahinalp, S. Cenk; Valencia, Alfonso; Abascal, Federico; [...]Author Correction: Pathway and network analysis of more than 2500 whole cancer genomesView onlineSchließen
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Published in: Nature Communications
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Carlevaro-Fita, Joana; Lanzós, Andrés; Feuerbach, Lars; Hong, Chen; Mas-Ponte, David; Pedersen, Jakob Skou; Abascal, Federico; Amin, Samirkumar B.; Bader, Gary D.; Barenboim, Jonathan; Beroukhim, Rameen; Bertl, Johanna; Boroevich, Keith A.; Brunak, Søren; Campbell, Peter J.; Carlevaro-Fita, Joana; Chakravarty, Dimple; Chan, Calvin Wing Yiu; Chen, Ken; Choi, Jung Kyoon; Deu-Pons, Jordi; Dhingra, Priyanka; Diamanti, Klev; Feuerbach, Lars; [...]Cancer LncRNA Census reveals evidence for deep functional conservation of long noncoding RNAs in tumorigenesisView onlineSchließen
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Published in: Communications Biology
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Shuai, Shimin; Abascal, Federico; Amin, Samirkumar B.; Bader, Gary D.; Bandopadhayay, Pratiti; Barenboim, Jonathan; Beroukhim, Rameen; Bertl, Johanna; Boroevich, Keith A.; Brunak, Søren; Campbell, Peter J.; Carlevaro-Fita, Joana; Chakravarty, Dimple; Chan, Calvin Wing Yiu; Chen, Ken; Choi, Jung Kyoon; Deu-Pons, Jordi; Dhingra, Priyanka; Diamanti, Klev; Feuerbach, Lars; Fink, J. Lynn; Fonseca, Nuno A.; Frigola, Joan; Gambacorti-Passerini, Carlo; [...]Combined burden and functional impact tests for cancer driver discovery using DriverPowerView onlineSchließen
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Published in: Nature Communications
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Paczkowska, Marta; Barenboim, Jonathan; Sintupisut, Nardnisa; Fox, Natalie S.; Zhu, Helen; Abd-Rabbo, Diala; Mee, Miles W.; Boutros, Paul C.; Abascal, Federico; Amin, Samirkumar B.; Bader, Gary D.; Beroukhim, Rameen; Bertl, Johanna; Boroevich, Keith A.; Brunak, Søren; Campbell, Peter J.; Carlevaro-Fita, Joana; Chakravarty, Dimple; Chan, Calvin Wing Yiu; Chen, Ken; Choi, Jung Kyoon; Deu-Pons, Jordi; Dhingra, Priyanka; Diamanti, Klev; [...]Integrative pathway enrichment analysis of multivariate omics dataView onlineSchließen
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Published in: Nature Communications
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Reyna, Matthew A.; Haan, David; Paczkowska, Marta; Verbeke, Lieven P. C.; Vazquez, Miguel; Kahraman, Abdullah; Pulido-Tamayo, Sergio; Barenboim, Jonathan; Wadi, Lina; Dhingra, Priyanka; Shrestha, Raunak; Getz, Gad; Lawrence, Michael S.; Pedersen, Jakob Skou; Rubin, Mark A.; Wheeler, David A.; Brunak, Søren; Izarzugaza, Jose M. G.; Khurana, Ekta; Marchal, Kathleen; von Mering, Christian; Sahinalp, S. Cenk; Valencia, Alfonso; Abascal, Federico; [...]Pathway and network analysis of more than 2500 whole cancer genomesView onlineSchließen
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Published in: Nature Communications
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Calabrese, Claudia; Davidson, Natalie R.; Demircioğlu, Deniz; Fonseca, Nuno A.; He, Yao; Kahles, André; Lehmann, Kjong-Van; Liu, Fenglin; Shiraishi, Yuichi; Soulette, Cameron M.; Urban, Lara; Calabrese, Claudia; Davidson, Natalie R.; Demircioğlu, Deniz; Fonseca, Nuno A.; He, Yao; Kahles, André; Lehmann, Kjong-Van; Liu, Fenglin; Shiraishi, Yuichi; Soulette, Cameron M.; Urban, Lara; Greger, Liliana; Li, Siliang; [...]Author Correction: Genomic basis for RNA alterations in cancerView onlineSchließen
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Published in: Nature
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Calabrese, Claudia; Davidson, Natalie R.; Demircioğlu, Deniz; Fonseca, Nuno A.; He, Yao; Kahles, André; Lehmann, Kjong-Van; Liu, Fenglin; Shiraishi, Yuichi; Soulette, Cameron M.; Urban, Lara; Calabrese, Claudia; Davidson, Natalie R.; Demircioğlu, Deniz; Fonseca, Nuno A.; He, Yao; Kahles, André; Lehmann, Kjong-Van; Liu, Fenglin; Shiraishi, Yuichi; Soulette, Cameron M.; Urban, Lara; Greger, Liliana; Li, Siliang; [...]Genomic basis for RNA alterations in cancerView onlineSchließen
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Published in: Nature
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Zhang, Yiqun; Chen, Fengju; Fonseca, Nuno A.; He, Yao; Fujita, Masashi; Nakagawa, Hidewaki; Zhang, Zemin; Brazma, Alvis; Amin, Samirkumar B.; Awadalla, Philip; Bailey, Peter J.; Brazma, Alvis; Brooks, Angela N.; Calabrese, Claudia; Chateigner, Aurélien; Cortés-Ciriano, Isidro; Craft, Brian; Craft, David; Creighton, Chad J.; Davidson, Natalie R.; Demircioğlu, Deniz; Erkek, Serap; Fonseca, Nuno A.; Frenkel-Morgenstern, Milana; [...]Author Correction: High-coverage whole-genome analysis of 1220 cancers reveals hundreds of genes deregulated by rearrangement-mediated cis-regulatory alterationsView onlineSchließen
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Published in: Nature Communications
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Zhang, Yiqun; Chen, Fengju; Fonseca, Nuno A.; He, Yao; Fujita, Masashi; Nakagawa, Hidewaki; Zhang, Zemin; Brazma, Alvis; Amin, Samirkumar B.; Awadalla, Philip; Bailey, Peter J.; Brazma, Alvis; Brooks, Angela N.; Calabrese, Claudia; Chateigner, Aurélien; Cortés-Ciriano, Isidro; Craft, Brian; Craft, David; Creighton, Chad J.; Davidson, Natalie R.; Demircioğlu, Deniz; Erkek, Serap; Fonseca, Nuno A.; Frenkel-Morgenstern, Milana; [...]High-coverage whole-genome analysis of 1220 cancers reveals hundreds of genes deregulated by rearrangement-mediated cis-regulatory alterationsView onlineSchließen
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Published in: Nature Communications
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Akdemir, Kadir C.; Le, Victoria T.; Chandran, Sahaana; Li, Yilong; Verhaak, Roel G.; Beroukhim, Rameen; Campbell, Peter J.; Chin, Lynda; Dixon, Jesse R.; Futreal, P. Andrew; Akdemir, Kadir C.; Alvarez, Eva G.; Baez-Ortega, Adrian; Boutros, Paul C.; Bowtell, David D. L.; Brors, Benedikt; Burns, Kathleen H.; Campbell, Peter J.; Chan, Kin; Chen, Ken; Cortés-Ciriano, Isidro; Dueso-Barroso, Ana; Dunford, Andrew J.; Edwards, Paul A.; [...]Author Correction: Disruption of chromatin folding domains by somatic genomic rearrangements in human cancerView onlineSchließen
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Published in: Nature Genetics
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Akdemir, Kadir C.; Le, Victoria T.; Chandran, Sahaana; Li, Yilong; Verhaak, Roel G.; Beroukhim, Rameen; Campbell, Peter J.; Chin, Lynda; Dixon, Jesse R.; Futreal, P. Andrew; Akdemir, Kadir C.; Alvarez, Eva G.; Baez-Ortega, Adrian; Boutros, Paul C.; Bowtell, David D. L.; Brors, Benedikt; Burns, Kathleen H.; Campbell, Peter J.; Chan, Kin; Chen, Ken; Cortés-Ciriano, Isidro; Dueso-Barroso, Ana; Dunford, Andrew J.; Edwards, Paul A.; [...]Disruption of chromatin folding domains by somatic genomic rearrangements in human cancerView onlineSchließen
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Published in: Nature Genetics