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  1. Leclerc, Quentin J.; Fuller, Naomi M.; Keogh, Ruth H.; Diaz-Ordaz, Karla; Sekula, Richard; Semple, Malcolm G.; Baillie, J. Kenneth; Semple, Malcolm G.; Openshaw, Peter J. M.; Carson, Gail; Alex, Beatrice; Bach, Benjamin; Barclay, Wendy S.; Bogaert, Debby; Chand, Meera; Cooke, Graham S.; Docherty, Annemarie B.; Dunning, Jake; da Silva Filipe, Ana; Fletcher, Tom; Green, Christopher A.; Harrison, Ewen M.; Hiscox, Julian A.; Ho, Antonia Ying Wai; [...]

    Importance of patient bed pathways and length of stay differences in predicting COVID-19 hospital bed occupancy in England

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    Springer Science and Business Media LLC, 2021

    Published in: BMC Health Services Research, 21 (2021) 1

  2. Sidhu, Jasmin K; Siggins, Matthew K; Liew, Felicity; Russell, Clark D; Uruchurtu, Ashley S S; Davis, Christopher; Turtle, Lance; Moore, Shona C; Hardwick, Hayley E; Oosthuyzen, Wilna; Thomson, Emma C; Semple, Malcolm G; Baillie, J Kenneth; Openshaw, Peter J M; Thwaites, Ryan S; Baillie, J Kenneth; Openshaw, Peter J M; Semple, Malcolm G; Alex, Beatrice; Andrikopoulos, Petros; Bach, Benjamin; Barclay, Wendy S; Bogaert, Debby; Chand, Meera; [...]

    Delayed Mucosal Antiviral Responses Despite Robust Peripheral Inflammation in Fatal COVID-19

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    Oxford University Press (OUP), 2024

    Published in: The Journal of Infectious Diseases, 230 (2024) 1, Seite e17-e29

  3. Goldswain, Hannah; Dong, Xiaofeng; Penrice-Randal, Rebekah; Alruwaili, Muhannad; Shawli, Ghada T.; Prince, Tessa; Williamson, Maia Kavanagh; Raghwani, Jayna; Randle, Nadine; Jones, Benjamin; Donovan-Banfield, I’ah; Salguero, Francisco J.; Tree, Julia A.; Hall, Yper; Hartley, Catherine; Erdmann, Maximilian; Bazire, James; Jearanaiwitayakul, Tuksin; Semple, Malcolm G.; Openshaw, Peter J. M.; Baillie, J. Kenneth; Baillie, J. Kenneth; Semple, Malcolm G.; Openshaw, Peter J. M.; [...]

    The P323L substitution in the SARS-CoV-2 polymerase (NSP12) confers a selective advantage during infection

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    Springer Science and Business Media LLC, 2023

    Published in: Genome Biology, 24 (2023) 1

  4. Sullivan, Michael K; Lees, Jennifer S; Drake, Thomas M; Docherty, Annemarie B; Oates, Georgia; Hardwick, Hayley E; Russell, Clark D; Merson, Laura; Dunning, Jake; Nguyen-Van-Tam, Jonathan S; Openshaw, Peter; Harrison, Ewen M; Baillie, J Kenneth; Baillie, J Kenneth; Semple, Malcolm G; Openshaw, Peter J M; Carson, Gail; Alex, Beatrice; Bach, Benjamin; Barclay, Wendy S; Bogaert, Debby; Chand, Meera; Cooke, Graham S; Docherty, Annemarie B; [...]

    Acute kidney injury in patients hospitalized with COVID-19 from the ISARIC WHO CCP-UK Study: a prospective, multicentre cohort study

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    Oxford University Press (OUP), 2022

    Published in: Nephrology Dialysis Transplantation, 37 (2022) 2, Seite 271-284

  5. Närhi, Fiina; Moonesinghe, S Ramani; Shenkin, Susan D; Drake, Thomas M; Mulholland, Rachel H; Donegan, Cara; Dunning, Jake; Fairfield, Cameron J; Girvan, Michelle; Hardwick, Hayley E; Ho, Antonia; Leeming, Gary; Nguyen-Van-Tam, Jonathan S; Pius, Riinu; Russell, Clark D; Shaw, Catherine A; Spencer, Rebecca G; Turtle, Lance; Openshaw, Peter J M; Baillie, J Kenneth; Harrison, Ewen M; Semple, Malcolm G; Docherty, Annemarie B; Baillie, J Kenneth; [...]

    Implementation of corticosteroids in treatment of COVID-19 in the ISARIC WHO Clinical Characterisation Protocol UK: prospective, cohort study

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    Elsevier BV, 2022

    Published in: The Lancet Digital Health, 4 (2022) 4, Seite e220-e234

  6. Relph, Katharine A; Russell, Clark D; Fairfield, Cameron J; Turtle, Lance; de Silva, Thushan I; Siggins, Matthew K; Drake, Thomas M; Thwaites, Ryan S; Abrams, Simon; Moore, Shona C; Hardwick, Hayley E; Oosthuyzen, Wilna; Harrison, Ewen M; Docherty, Annemarie B; Openshaw, Peter J M; Baillie, J Kenneth; Semple, Malcolm G; Ho, Antonia; Baillie, J Kenneth; Semple, Malcolm G; Openshaw, Peter J M; Carson, Gail; Alex, Beatrice; Bach, Benjamin; [...]

    Procalcitonin Is Not a Reliable Biomarker of Bacterial Coinfection in People With Coronavirus Disease 2019 Undergoing Microbiological Investigation at the Time of Hospital Admission

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    Oxford University Press (OUP), 2022

    Published in: Open Forum Infectious Diseases, 9 (2022) 5

  7. Vink, Elen; Davis, Chris; MacLean, Alasdair; Pascall, David; McDonald, Sarah E; Gunson, Rory; Hardwick, Hayley E; Oosthuyzen, Wilna; Openshaw, Peter J M; Baillie, J Kenneth; Semple, Malcolm G; Ho, Antonia; Baillie, J Kenneth; Openshaw, Peter J M; Semple, Malcolm G; Barclay, Wendy S; Bogaert, Debby; Chand, Meera; Chechi, Kanta; Cooke, Graham S; Filipe, Ana da Silva; Silva, Thushan de; Docherty, Annemarie B; Correia, Gonçalo dos Santos; [...]

    Viral Coinfections in Hospitalized Coronavirus Disease 2019 Patients Recruited to the International Severe Acute Respiratory and Emerging Infections Consortium WHO Clinical Characterisation Protocol UK Study

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    Oxford University Press (OUP), 2022

    Published in: Open Forum Infectious Diseases, 9 (2022) 11

  8. Russell, Clark D; Fairfield, Cameron J; Drake, Thomas M; Turtle, Lance; Seaton, R Andrew; Wootton, Dan G; Sigfrid, Louise; Harrison, Ewen M; Docherty, Annemarie B; de Silva, Thushan I; Egan, Conor; Pius, Riinu; Hardwick, Hayley E; Merson, Laura; Girvan, Michelle; Dunning, Jake; Nguyen-Van-Tam, Jonathan S; Openshaw, Peter J M; Baillie, J Kenneth; Semple, Malcolm G; Ho, Antonia; Baillie, J Kenneth; Semple, Malcolm G; Openshaw, Peter JM; [...]

    Co-infections, secondary infections, and antimicrobial use in patients hospitalised with COVID-19 during the first pandemic wave from the ISARIC WHO CCP-UK study: a multicentre, prospective cohort study

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    Elsevier BV, 2021

    Published in: The Lancet Microbe, 2 (2021) 8, Seite e354-e365

  9. Michael, Benedict D.; Dunai, Cordelia; Needham, Edward J.; Tharmaratnam, Kukatharmini; Williams, Robyn; Huang, Yun; Boardman, Sarah A.; Clark, Jordan J.; Sharma, Parul; Subramaniam, Krishanthi; Wood, Greta K.; Collie, Ceryce; Digby, Richard; Ren, Alexander; Norton, Emma; Leibowitz, Maya; Ebrahimi, Soraya; Fower, Andrew; Fox, Hannah; Tato, Esteban; Ellul, Mark A.; Sunderland, Geraint; Held, Marie; Hetherington, Claire; [...]

    Author Correction: Para-infectious brain injury in COVID-19 persists at follow-up despite attenuated cytokine and autoantibody responses

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    Springer Science and Business Media LLC, 2024

    Published in: Nature Communications, 15 (2024) 1

  10. Michael, Benedict D.; Dunai, Cordelia; Needham, Edward J.; Tharmaratnam, Kukatharmini; Williams, Robyn; Huang, Yun; Boardman, Sarah A.; Clark, Jordan J.; Sharma, Parul; Subramaniam, Krishanthi; Wood, Greta K.; Collie, Ceryce; Digby, Richard; Ren, Alexander; Norton, Emma; Leibowitz, Maya; Ebrahimi, Soraya; Fower, Andrew; Fox, Hannah; Tato, Esteban; Ellul, Mark A.; Sunderland, Geraint; Held, Marie; Hetherington, Claire; [...]

    Para-infectious brain injury in COVID-19 persists at follow-up despite attenuated cytokine and autoantibody responses

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    Springer Science and Business Media LLC, 2023

    Published in: Nature Communications, 14 (2023) 1

  11. Dejnirattisai, Wanwisa; Huo, Jiandong; Zhou, Daming; Zahradník, Jiří; Supasa, Piyada; Liu, Chang; Duyvesteyn, Helen M.E.; Ginn, Helen M.; Mentzer, Alexander J.; Tuekprakhon, Aekkachai; Nutalai, Rungtiwa; Wang, Beibei; Dijokaite, Aiste; Khan, Suman; Avinoam, Ori; Bahar, Mohammad; Skelly, Donal; Adele, Sandra; Johnson, Sile Ann; Amini, Ali; Ritter, Thomas G.; Mason, Chris; Dold, Christina; Pan, Daniel; [...]

    SARS-CoV-2 Omicron-B.1.1.529 leads to widespread escape from neutralizing antibody responses

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    Elsevier BV, 2022

    Published in: Cell, 185 (2022) 3, Seite 467-484.e15

  12. Zhu, Yanshan; Almeida, Flávia Jacqueline; Baillie, J. Kenneth; Bowen, Asha C.; Britton, Philip N.; Brizuela, Martin Eduardo; Buonsenso, Danilo; Burgner, David; Chew, Keng Yih; Chokephaibulkit, Kulkanya; Cohen, Cheryl; Cormier, Stephania A.; Crawford, Nigel; Curtis, Nigel; Farias, Camila G. A.; Gilks, Charles F.; von Gottberg, Anne; Hamer, Diana; Jarovsky, Daniel; Jassat, Waasila; Jesus, Ana Rita; Kemp, Lisa S.; Khumcha, Benjawan; McCallum, Georgina; [...]

    International Pediatric COVID-19 Severity Over the Course of the Pandemic

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    American Medical Association (AMA), 2023

    Published in: JAMA Pediatrics, 177 (2023) 10, Seite 1073

  13. de Silva, Thushan I.; Liu, Guihai; Lindsey, Benjamin B.; Dong, Danning; Moore, Shona C.; Hsu, Nienyun Sharon; Shah, Dhruv; Wellington, Dannielle; Mentzer, Alexander J.; Angyal, Adrienn; Brown, Rebecca; Parker, Matthew D.; Ying, Zixi; Yao, Xuan; Turtle, Lance; Dunachie, Susanna; Maini, Mala K.; Ogg, Graham; Knight, Julian C.; Peng, Yanchun; Rowland-Jones, Sarah L.; Dong, Tao; Aanensen, David M.; Abudahab, Khalil; [...]

    The impact of viral mutations on recognition by SARS-CoV-2 specific T cells

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    Elsevier BV, 2021

    Published in: iScience, 24 (2021) 11, Seite 103353

  14. Liew, Felicity; Efstathiou, Claudia; Fontanella, Sara; Richardson, Matthew; Saunders, Ruth; Swieboda, Dawid; Sidhu, Jasmin K.; Ascough, Stephanie; Moore, Shona C.; Mohamed, Noura; Nunag, Jose; King, Clara; Leavy, Olivia C.; Elneima, Omer; McAuley, Hamish J. C.; Shikotra, Aarti; Singapuri, Amisha; Sereno, Marco; Harris, Victoria C.; Houchen-Wolloff, Linzy; Greening, Neil J.; Lone, Nazir I.; Thorpe, Matthew; Thompson, A. A. Roger; [...]

    Large-scale phenotyping of patients with long COVID post-hospitalization reveals mechanistic subtypes of disease

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    Springer Science and Business Media LLC, 2024

    Published in: Nature Immunology, 25 (2024) 4, Seite 607-621

  15. Liew, Felicity; Talwar, Shubha; Cross, Andy; Willett, Brian J.; Scott, Sam; Logan, Nicola; Siggins, Matthew K.; Swieboda, Dawid; Sidhu, Jasmin K.; Efstathiou, Claudia; Moore, Shona C.; Davis, Chris; Mohamed, Noura; Nunag, Jose; King, Clara; Thompson, A.A. Roger; Rowland-Jones, Sarah L.; Docherty, Annemarie B.; Chalmers, James D.; Ho, Ling-Pei; Horsley, Alexander; Raman, Betty; Poinasamy, Krisnah; Marks, Michael; [...]

    SARS-CoV-2-specific nasal IgA wanes 9 months after hospitalisation with COVID-19 and is not induced by subsequent vaccination

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    Elsevier BV, 2023

    Published in: eBioMedicine, 87 (2023), Seite 104402

  16. Niemi, Mari E. K.; Karjalainen, Juha; Liao, Rachel G.; Neale, Benjamin M.; Daly, Mark; Ganna, Andrea; Pathak, Gita A.; Andrews, Shea J.; Kanai, Masahiro; Veerapen, Kumar; Fernandez-Cadenas, Israel; Schulte, Eva C.; Striano, Pasquale; Marttila, Minttu; Minica, Camelia; Marouli, Eirini; Karim, Mohd Anisul; Wendt, Frank R.; Savage, Jeanne; Sloofman, Laura; Butler-Laporte, Guillaume; Kim, Han-Na; Kanoni, Stavroula; Okada, Yukinori; [...]

    Mapping the human genetic architecture of COVID-19

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    Springer Science and Business Media LLC, 2021

    Published in: Nature, 600 (2021) 7889, Seite 472-477