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Hanna, Courtney W.; Pérez-Palacios, Raquel; Gahurova, Lenka; Schubert, Michael; Krueger, Felix; Biggins, Laura; Andrews, Simon; Colomé-Tatché, Maria; Bourc’his, Deborah; Dean, Wendy; Kelsey, Gavin

Endogenous retroviral insertions drive non-canonical imprinting in extra-embryonic tissues

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Springer Science and Business Media LLC, 2019

Published in: Genome Biology
Hanna, Courtney W.; Taudt, Aaron; Huang, Jiahao; Gahurova, Lenka; Kranz, Andrea; Andrews, Simon; Dean, Wendy; Stewart, A. Francis; Colomé-Tatché, Maria; Kelsey, Gavin

MLL2 conveys transcription-independent H3K4 trimethylation in oocytes

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Springer Science and Business Media LLC, 2018

Published in: Nature Structural & Molecular Biology
van der Graaf, Adriaan; Wardenaar, René; Neumann, Drexel A.; Taudt, Aaron; Shaw, Ruth G.; Jansen, Ritsert C.; Schmitz, Robert J.; Colomé-Tatché, Maria; Johannes, Frank

Rate, spectrum, and evolutionary dynamics of spontaneous epimutations

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Proceedings of the National Academy of Sciences, 2015

Published in: Proceedings of the National Academy of Sciences
van der Graaf, Adriaan; Wardenaar, René; Neumann, Drexel A.; Taudt, Aaron; Shaw, Ruth G.; Jansen, Ritsert C.; Schmitz, Robert J.; Colomé-Tatché, Maria; Johannes, Frank

Rate, spectrum, and evolutionary dynamics of spontaneous epimutations

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National Academy of Sciences, 2015

Published in: Proceedings of the National Academy of Sciences of the United States of America
Johannes, Frank; Wardenaar, René; Colomé-Tatché, Maria; Mousson, Florence; de Graaf, Petra; Mokry, Michal; Guryev, Victor; Timmers, H.Th. Marc; Cuppen, Edwin; Jansen, Ritsert C.

Comparing genome-wide chromatin profiles using ChIP-chip or ChIP-seq

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Oxford University Press (OUP), 2010

Published in: Bioinformatics
Lubatti, Gabriele; Stock, Marco; Iturbide, Ane; Ruiz Tejada Segura, Mayra L.; Riepl, Melina; Tyser, Richard C. V.; Danese, Anna; Colomé-Tatché, Maria; Theis, Fabian J.; Srinivas, Shankar; Torres-Padilla, Maria-Elena; Scialdone, Antonio

CIARA: a cluster-independent algorithm for identifying markers of rare cell types from single-cell sequencing data

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The Company of Biologists, 2023

Published in: Development
Bortoluzzi, Sabrina; Dashtsoodol, Nyambayar; Engleitner, Thomas; Drees, Christoph; Helmrath, Sabine; Mir, Jonas; Toska, Albulena; Flossdorf, Michael; Öllinger, Rupert; Solovey, Maria; Colomé-Tatché, Maria; Kalfaoglu, Bahire; Ono, Masahiro; Buch, Thorsten; Ammon, Tim; Rad, Roland; Schmidt-Supprian, Marc

Brief homogeneous TCR signals instruct common iNKT progenitors whose effector diversification is characterized by subsequent cytokine signaling

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Elsevier BV, 2021

Published in: Immunity
Shahryary, Yadollah; Symeonidi, Aikaterini; Hazarika, Rashmi R.; Denkena, Johanna; Mubeen, Talha; Hofmeister, Brigitte; van Gurp, Thomas; Colomé-Tatché, Maria; Verhoeven, Koen J.F.; Tuskan, Gerald; Schmitz, Robert J.; Johannes, Frank

AlphaBeta: computational inference of epimutation rates and spectra from high-throughput DNA methylation data in plants

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Springer Science and Business Media LLC, 2020

Published in: Genome Biology
Schukken, Klaske M; Lin, Yu-Chih; Bakker, Petra L; Schubert, Michael; Preuss, Stephanie F; Simon, Judith E; van den Bos, Hilda; Storchova, Zuzana; Colomé-Tatché, Maria; Bastians, Holger; Spierings, Diana CJ; Foijer, Floris

Altering microtubule dynamics is synergistically toxic with spindle assembly checkpoint inhibition

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Life Science Alliance, LLC, 2020

Published in: Life Science Alliance
Cortijo, Sandra; Wardenaar, René; Colomé-Tatché, Maria; Gilly, Arthur; Etcheverry, Mathilde; Labadie, Karine; Caillieux, Erwann; Hospital, Fréderic; Aury, Jean-Marc; Wincker, Patrick; Roudier, François; Jansen, Ritsert C.; Colot, Vincent; Johannes, Frank

Mapping the Epigenetic Basis of Complex Traits

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American Association for the Advancement of Science (AAAS), 2014

Published in: Science
Cortijo, Sandra; Wardenaar, René; Colomé-Tatché, Maria; Gilly, Arthur; Etcheverry, Mathilde; Labadie, Karine; Caillieux, Erwann; Hospital, Fréderic; Aury, Jean-Marc; Wincker, Patrick; Roudier, François; Jansen, Ritsert C.; Colot, Vincent; Johannes, Frank

Mapping the Epigenetic Basis of Complex Traits

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American Association for the Advancement of Science, 2014

Published in: Science
Rintisch, Carola; Heinig, Matthias; Bauerfeind, Anja; Schafer, Sebastian; Mieth, Christin; Patone, Giannino; Hummel, Oliver; Chen, Wei; Cook, Stuart; Cuppen, Edwin; Colomé-Tatché, Maria; Johannes, Frank; Jansen, Ritsert C.; Neil, Helen; Werner, Michel; Pravenec, Michal; Vingron, Martin; Hubner, Norbert

Natural variation of histone modification and its impact on gene expression in the rat genome

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Cold Spring Harbor Laboratory, 2014

Published in: Genome Research
Colomé-Tatché, Maria; Cortijo, Sandra; Wardenaar, René; Morgado, Lionel; Lahouze, Benoit; Sarazin, Alexis; Etcheverry, Mathilde; Martin, Antoine; Feng, Suhua; Duvernois-Berthet, Evelyne; Labadie, Karine; Wincker, Patrick; Jacobsen, Steven E.; Jansen, Ritsert C.; Colot, Vincent; Johannes, Frank

Features of the Arabidopsis recombination landscape resulting from the combined loss of sequence variation and DNA methylation

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Proceedings of the National Academy of Sciences, 2012

Published in: Proceedings of the National Academy of Sciences
Colomé-Tatché, Maria; Cortijo, Sandra; Wardenaar, René; Morgado, Lionel; Lahouze, Benoit; Sarazin, Alexis; Etcheverry, Mathilde; Martin, Antoine; Feng, Suhua; Duvernois-Berthet, Evelyne; Labadie, Karine; Wincker, Patrick; Jacobsen, Steven E.; Jansen, Ritsert C.; Colot, Vincent; Johannes, Frank

Features of the Arabidopsis recombination landscape resulting from the combined loss of sequence variation and DNA methylation

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National Academy of Sciences, 2012

Published in: Proceedings of the National Academy of Sciences of the United States of America
Antoniolli, Martina; Solovey, Maria; Bararia, Deepak; Strobl, Carolin Dorothea; Keay, William David; Hildebrand, Johannes Adrian; Heide, Michael; Passerini, Verena; Wange, Lucas; Enard, Wolfgang; Thieme, Susanne; Blum, Helmut; Rudelius, Martina; Bultmann, Sebastian; Leonhardt, Heinrich; Subklewe, Marion; von Bergwelt, Michael; Colomé-Tatché, Maria; Weigert, Oliver

ARID1A Controls a Novel Transcriptional Network Regulating FAS in Follicular Lymphoma

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American Society of Hematology, 2021

Published in: Blood
Swoboda, Anja S.; Arfelli, Vanessa C.; Danese, Anna; Windisch, Roland; Kerbs, Paul; Redondo Monte, Enric; Bagnoli, Johannes W.; Chen-Wichmann, Linping; Caroleo, Alessandra; Cusan, Monica; Krebs, Stefan; Blum, Helmut; Sterr, Michael; Enard, Wolfgang; Herold, Tobias; Colomé-Tatché, Maria; Wichmann, Christian; Greif, Philipp A.

CSF3R T618I Collaborates With RUNX1-RUNX1T1 to Expand Hematopoietic Progenitors and Sensitizes to GLI Inhibition

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Wiley, 2023

Published in: HemaSphere
Hofmeister, Brigitte T.; Denkena, Johanna; Colomé-Tatché, Maria; Shahryary, Yadollah; Hazarika, Rashmi; Grimwood, Jane; Mamidi, Sujan; Jenkins, Jerry; Grabowski, Paul P.; Sreedasyam, Avinash; Shu, Shengqiang; Barry, Kerrie; Lail, Kathleen; Adam, Catherine; Lipzen, Anna; Sorek, Rotem; Kudrna, Dave; Talag, Jayson; Wing, Rod; Hall, David W.; Jacobsen, Daniel; Tuskan, Gerald A.; Schmutz, Jeremy; Johannes, Frank;

A genome assembly and the somatic genetic and epigenetic mutation rate in a wild long-lived perennial Populus trichocarpa

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Springer Science and Business Media LLC, 2020

Published in: Genome Biology
Richards, Christina L.; Alonso, Conchita; Becker, Claude; Bossdorf, Oliver; Bucher, Etienne; Colomé‐Tatché, Maria; Durka, Walter; Engelhardt, Jan; Gaspar, Bence; Gogol‐Döring, Andreas; Grosse, Ivo; van Gurp, Thomas P.; Heer, Katrin; Kronholm, Ilkka; Lampei, Christian; Latzel, Vít; Mirouze, Marie; Opgenoorth, Lars; Paun, Ovidiu; Prohaska, Sonja J.; Rensing, Stefan A.; Stadler, Peter F.; Trucchi, Emiliano; Ullrich, Kristian;

Ecological plant epigenetics: Evidence from model and non‐model species, and the way forward

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Wiley, 2017

Published in: Ecology Letters
Kebede, Adam F; Nieborak, Anna; Shahidian, Lara Zorro; Le Gras, Stephanie; Richter, Florian; Gómez, Diana Aguilar; Baltissen, Marijke P; Meszaros, Gergo; Magliarelli, Helena de Fatima; Taudt, Aaron; Margueron, Raphael; Colomé-Tatché, Maria; Ricci, Romeo; Daujat, Sylvain; Vermeulen, Michiel; Mittler, Gerhard; Schneider, Robert

Histone propionylation is a mark of active chromatin

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Springer Science and Business Media LLC, 2017

Published in: Nature Structural & Molecular Biology
van den Bos, Hilda; Spierings, Diana C. J.; Taudt, Aaron; Bakker, Bjorn; Porubský, David; Falconer, Ester; Novoa, Carolina; Halsema, Nancy; Kazemier, Hinke G.; Hoekstra-Wakker, Karina; Guryev, Victor; den Dunnen, Wilfred F. A.; Foijer, Floris; Colomé-Tatché, Maria; Boddeke, Hendrikus W. G. M.; Landsdorp, Peter M.

Erratum to: Single-cell whole genome sequencing reveals no evidence for common aneuploidy in normal and Alzheimer’s disease neurons

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Springer Science and Business Media LLC, 2016

Published in: Genome Biology

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