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  1. Schuster, Heiko; Peper, Janet K.; Bösmüller, Hans-Christian; Röhle, Kevin; Backert, Linus; Bilich, Tatjana; Ney, Britta; Löffler, Markus W.; Kowalewski, Daniel J.; Trautwein, Nico; Rabsteyn, Armin; Engler, Tobias; Braun, Sabine; Haen, Sebastian P.; Walz, Juliane S.; Schmid-Horch, Barbara; Brucker, Sara Y.; Wallwiener, Diethelm; Kohlbacher, Oliver; Fend, Falko; Rammensee, Hans-Georg; Stevanović, Stefan; Staebler, Annette; Wagner, Philipp

    The immunopeptidomic landscape of ovarian carcinomas

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    Proceedings of the National Academy of Sciences, 2017

    Published in: Proceedings of the National Academy of Sciences

  2. Schuster, Heiko; Peper, Janet K.; Bösmüller, Hans-Christian; Röhle, Kevin; Backert, Linus; Bilich, Tatjana; Ney, Britta; Löffler, Markus W.; Kowalewski, Daniel J.; Trautwein, Nico; Rabsteyn, Armin; Engler, Tobias; Braun, Sabine; Haen, Sebastian P.; Walz, Juliane S.; Schmid-Horch, Barbara; Brucker, Sara Y.; Wallwiener, Diethelm; Kohlbacher, Oliver; Fend, Falko; Rammensee, Hans-Georg; Stevanovic, Stefan; Staebler, Annette; Wagner, Philipp

    The immunopeptidomic landscape of ovarian carcinomas

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    National Academy of Sciences, 2017

    Published in: Proceedings of the National Academy of Sciences of the United States of America

  3. Oberle, Corinna S.; Joos, Beda; Rusert, Peter; Campbell, Nottania K.; Beauparlant, David; Kuster, Herbert; Weber, Jacqueline; Schenkel, Corinne D.; Scherrer, Alexandra U.; Magnus, Carsten; Kouyos, Roger; Rieder, Philip; Niederöst, Barbara; Braun, Dominique L.; Pavlovic, Jovan; Böni, Jürg; Yerly, Sabine; Klimkait, Thomas; Aubert, Vincent; Trkola, Alexandra; Metzner, Karin J.; Günthard, Huldrych F.

    Tracing HIV-1 transmission: envelope traits of HIV-1 transmitter and recipient pairs

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    Springer Science and Business Media LLC, 2016

    Published in: Retrovirology

  4. Marszalek, Jaroslaw; De Los Rios, Paolo; Cyr, Douglas; Mayer, Matthias P.; Adupa, Vasista; Andréasson, Claes; Blatch, Gregory L.; Braun, Janice E.A.; Brodsky, Jeffrey L.; Bukau, Bernd; Chapple, J. Paul; Conz, Charlotte; Dementin, Sébastien; Genevaux, Pierre; Genest, Olivier; Goloubinoff, Pierre; Gestwicki, Jason; Hammond, Colin M.; Hines, Justin K.; Ishikawa, Koji; Joachimiak, Lukasz A.; Kirstein, Janine; Liberek, Krzysztof; Mokranjac, Dejana; [...]

    J-domain proteins: From molecular mechanisms to diseases

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    Elsevier BV, 2024

    Published in: Cell Stress and Chaperones

  5. Bachmann, Nadine; von Braun, Amrei; Labhardt, Niklaus D; Kadelka, Claus; Günthard, Huldrych F; Sekaggya-Wiltshire, Christine; Castelnuovo, Barbara; Kambugu, Andrew; Lejone, Thabo I; Böni, Jürg; Yerly, Sabine; Perreau, Matthieu; Klimkait, Thomas; Kouyos, Roger D; Fehr, Jan; Anagnostopoulos, A; Battegay, M; Bernasconi, E; Böni, J; Braun, D L; Bucher, H C; Calmy, A; Cavassini, M; Ciuffi, A; [...]

    Importance of routine viral load monitoring: higher levels of resistance at ART failure in Uganda and Lesotho compared with Switzerland

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    Oxford University Press (OUP), 2019

    Published in: Journal of Antimicrobial Chemotherapy

  6. Kusejko, Katharina; Bachmann, Nadine; Chaudron, Sandra E; Nguyen, Huyen; Braun, Dominique L; Hampel, Benjamin; Battegay, Manuel; Bernasconi, Enos; Calmy, Alexandra; Cavassini, Matthias; Hoffmann, Matthias; Böni, Jürg; Yerly, Sabine; Klimkait, Thomas; Perreau, Matthieu; Rauch, Andri; Günthard, Huldrych F; Kouyos, Roger D; Anagnostopoulos, A; Battegay, M; Bernasconi, E; Böni, J; Braun, D L; Bucher, H C; [...]

    A Systematic Phylogenetic Approach to Study the Interaction of HIV-1 With Coinfections, Noncommunicable Diseases, and Opportunistic Diseases

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    Oxford University Press (OUP), 2019

    Published in: The Journal of Infectious Diseases

  7. Carlisle, Louisa A; Turk, Teja; Kusejko, Katharina; Metzner, Karin J; Leemann, Christine; Schenkel, Corinne D; Bachmann, Nadine; Posada, Susana; Beerenwinkel, Niko; Böni, Jürg; Yerly, Sabine; Klimkait, Thomas; Perreau, Matthieu; Braun, Dominique L; Rauch, Andri; Calmy, Alexandra; Cavassini, Matthias; Battegay, Manuel; Vernazza, Pietro; Bernasconi, Enos; Günthard, Huldrych F; Kouyos, Roger D; Anagnostopoulos, A; Battegay, M; [...]

    Viral Diversity Based on Next-Generation Sequencing of HIV-1 Provides Precise Estimates of Infection Recency and Time Since Infection

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    Oxford University Press (OUP), 2019

    Published in: The Journal of Infectious Diseases

  8. Schumann, Katharina; Mauch, Cornelia; Klespe, Kai‐Christian; Loquai, Carmen; Nikfarjam, Ulrike; Schlaak, Max; Akçetin, Larissa; Kölblinger, Peter; Hoellwerth, Magdalena; Meissner, Markus; Mengi, Guelcin; Braun, Andreas Dominik; Mengoni, Miriam; Dummer, Reinhard; Mangana, Joanna; Sindrilaru, Mihaela‐Anca; Radmann, Dan; Hafner, Christine; Freund, Johann; Rappersberger, Klemens; Weihsengruber, Felix; Meiss, Frank; Reinhardt, Lydia; Meier, Friedegund; [...]

    Real‐world outcomes using PD‐1 antibodies and BRAF + MEK inhibitors for adjuvant melanoma treatment from 39 skin cancer centers in Germany, Austria and Switzerland

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    Wiley, 2023

    Published in: Journal of the European Academy of Dermatology and Venereology

  9. Labarile, Marco; Loosli, Tom; Zeeb, Marius; Kusejko, Katharina; Huber, Michael; Hirsch, Hans H; Perreau, Matthieu; Ramette, Alban; Yerly, Sabine; Cavassini, Matthias; Battegay, Manuel; Rauch, Andri; Calmy, Alexandra; Notter, Julia; Bernasconi, Enos; Fux, Christoph; Günthard, Huldrych F; Pasin, Chloé; Kouyos, Roger D; Abela, I; Aebi-Popp, K; Anagnostopoulos, A; Battegay, M; Bernasconi, E; [...]

    Quantifying and Predicting Ongoing Human Immunodeficiency Virus Type 1 Transmission Dynamics in Switzerland Using a Distance-Based Clustering Approach

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    Oxford University Press (OUP), 2023

    Published in: The Journal of Infectious Diseases

  10. Duran Ramirez, Jessy J; Ballouz, Tala; Nguyen, Huyen; Kusejko, Katharina; Chaudron, Sandra E; Huber, Michael; Hirsch, Hans H; Perreau, Matthieu; Ramette, Alban; Yerly, Sabine; Cavassini, Matthias; Stöckle, Marcel; Furrer, Hansjakob; Vernazza, Pietro; Bernasconi, Enos; Günthard, Huldrych F; Kouyos, Roger D; Aebi-Popp, K; Anagnostopoulos, A; Battegay, M; Bernasconi, E; Böni, J; Braun, D L; Bucher, H C; [...]

    Increasing Frequency and Transmission of HIV-1 Non-B Subtypes Among Men Who Have Sex With Men in the Swiss HIV Cohort Study

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    Oxford University Press (OUP), 2022

    Published in: The Journal of Infectious Diseases

  11. Chaudron, Sandra E; Leemann, Christine; Kusejko, Katharina; Nguyen, Huyen; Tschumi, Nadine; Marzel, Alex; Huber, Michael; Böni, Jürg; Perreau, Matthieu; Klimkait, Thomas; Yerly, Sabine; Ramette, Alban; Hirsch, Hans H; Rauch, Andri; Calmy, Alexandra; Vernazza, Pietro; Bernasconi, Enos; Cavassini, Matthias; Metzner, Karin J; Kouyos, Roger D; Günthard, Huldrych F; Aebi-Popp, K; Anagnostopoulos, A; Battegay, M; [...]

    A Systematic Molecular Epidemiology Screen Reveals Numerous Human Immunodeficiency Virus (HIV) Type 1 Superinfections in the Swiss HIV Cohort Study

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    Oxford University Press (OUP), 2022

    Published in: The Journal of Infectious Diseases

  12. Paioni, Paolo; Aebi-Popp, Karoline; Martinez de Tejada, Begoña; Rudin, Christoph; Bernasconi, Enos; Braun, Dominique L.; Kouyos, Roger; Wagner, Noémie; Crisinel, Pierre Alex; Güsewell, Sabine; Darling, Katharine E.A.; Duppenthaler, Andrea; Baumann, Marc; Polli, Christian; Fischer, Tina; Kahlert, Christian R.; Abela, I.; Aebi-Popp, K.; Anagnostopoulos, A.; Battegay, M.; Baumann, M.; Bernasconi, E.; Braun, D.L.; Bucher, H.C.; [...]

    Viral suppression and retention in HIV care during the postpartum period among women living with HIV: a longitudinal multicenter cohort study

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    Elsevier BV, 2023

    Published in: The Lancet Regional Health - Europe

  13. Nguyen, Huyen; Hampel, Benjamin; Garcia Nuñez, David; Battegay, Manuel; Hachfeld, Anna; Bernasconi, Enos; Calmy, Alexandra; Cavassini, Matthias; Vernazza, Pietro; Fellay, Jacques; Rudolph, Hannes; Huber, Michael; Leuzinger, Karoline; Perreau, Matthieu; Scherrer, Alexandra; Ramette, Alban Nicolas; Yerly, Sabine; Günthard, Huldrych F; Kouyos, Roger D; Kusejko, Katharina; Anagnostopoulos, A; Battegay, M; Bernasconi, E; Böni, J; [...]

    Identifying and Characterizing Trans Women in the Swiss HIV Cohort Study as an Epidemiologically Distinct Risk Group

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    Oxford University Press (OUP), 2022

    Published in: Clinical Infectious Diseases

  14. Nadeau, Sarah; Thorball, Christian W; Kouyos, Roger; Günthard, Huldrych F; Böni, Jürg; Yerly, Sabine; Perreau, Matthieu; Klimkait, Thomas; Rauch, Andri; Hirsch, Hans H; Cavassini, Matthias; Vernazza, Pietro; Bernasconi, Enos; Fellay, Jacques; Mitov, Venelin; Stadler, Tanja; Abela, I; Aebi-Popp, K; Anagnostopoulos, A; Battegay, M; Bernasconi, E; Braun, DL; Bucher, HC; Calmy, A; [...]

    A Phylogeny-aware GWAS Framework to Correct for Heritable Pathogen Effects on Infectious Disease Traits

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    Oxford University Press (OUP), 2022

    Published in: Molecular Biology and Evolution

  15. Pyngottu, Ashima; Scherrer, Alexandra U; Kouyos, Roger; Huber, Michael; Hirsch, Hans; Perreau, Matthieu; Yerly, Sabine; Calmy, Alexandra; Cavassini, Matthias; Stöckle, Marcel; Furrer, Hansjakob; Vernazza, Pietro; Bernasconi, Enos; Günthard, Huldrych F; Aebi-Popp, K; Anagnostopoulos, A; Battegay, M; Bernasconi, E; Böni, J; Braun, D L; Bucher, H C; Calmy, A; Cavassini, M; Ciuffi, A; [...]

    Predictors of Virological Failure and Time to Viral Suppression of First-Line Integrase Inhibitor–Based Antiretroviral Treatment

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    Oxford University Press (OUP), 2021

    Published in: Clinical Infectious Diseases

  16. Bachmann, Nadine; Kusejko, Katharina; Nguyen, Huyen; Chaudron, Sandra E; Kadelka, Claus; Turk, Teja; Böni, Jürg; Perreau, Matthieu; Klimkait, Thomas; Yerly, Sabine; Battegay, Manuel; Rauch, Andri; Ramette, Alban; Vernazza, Pietro; Bernasconi, Enos; Cavassini, Matthias; Günthard, Huldrych F; Kouyos, Roger D; Anagnostopoulos, A; Battegay, M; Bernasconi, E; Böni, J; Braun, D L; Bucher, H C; [...]

    Phylogenetic Cluster Analysis Identifies Virological and Behavioral Drivers of Human Immunodeficiency Virus Transmission in Men Who Have Sex With Men

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    Oxford University Press (OUP), 2021

    Published in: Clinical Infectious Diseases

  17. Abela, Irene A; Scherrer, Alexandra U; Böni, Jürg; Yerly, Sabine; Klimkait, Thomas; Perreau, Matthieu; Hirsch, Hans H; Furrer, Hansjakob; Calmy, Alexandra; Schmid, Patrick; Cavassini, Matthias; Bernasconi, Enos; Günthard, Huldrych F; Anagnostopoulos, A; Battegay, M; Bernasconi, E; Böni, J; Braun, D L; Bucher, H C; Calmy, A; Cavassini, M; Ciuffi, A; Dollenmaier, G; Egger, M; [...]

    Emergence of Drug Resistance in the Swiss HIV Cohort Study Under Potent Antiretroviral Therapy Is Observed in Socially Disadvantaged Patients

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    Oxford University Press (OUP), 2020

    Published in: Clinical Infectious Diseases

  18. Marzel, Alex; Kusejko, Katharina; Weber, Rainer; Bruggmann, Philip; Rauch, Andri; Roth, Jan A; Bernasconi, Enos; Calmy, Alexandra; Cavassini, Matthias; Hoffmann, Matthias; Böni, Jürg; Yerly, Sabine; Klimkait, Thomas; Perreau, Matthieu; Günthard, Huldrych F; Kouyos, Roger D; Anagnostopoulos, A; Battegay, M; Bernasconi, E; Böni, J; Braun, D L; Bucher, H C; Calmy, A; Cavassini, M; [...]

    The Cumulative Impact of Harm Reduction on the Swiss HIV Epidemic: Cohort Study, Mathematical Model, and Phylogenetic Analysis

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    Oxford University Press (OUP), 2018

    Published in: Open Forum Infectious Diseases

  19. Kusejko, Katharina; Kadelka, Claus; Marzel, Alex; Battegay, Manuel; Bernasconi, Enos; Calmy, Alexandra; Cavassini, Matthias; Hoffmann, Matthias; Böni, Jürg; Yerly, Sabine; Klimkait, Thomas; Perreau, Matthieu; Rauch, Andri; Günthard, Huldrych F; Kouyos, Roger D; Scherrer, Alexandra; Wild, Susanne; Perraudin, Danièle; Minichiello, Mirjam; Anagnostopoulos, A; Battegay, M; Bernasconi, E; Böni, J; Braun, D L; [...]

    Inferring the age difference in HIV transmission pairs by applying phylogenetic methods on the HIV transmission network of the Swiss HIV Cohort Study

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    Oxford University Press (OUP), 2018

    Published in: Virus Evolution

  20. Scherrer, Alexandra U; Traytel, Anna; Braun, Dominique L; Calmy, Alexandra; Battegay, Manuel; Cavassini, Matthias; Furrer, Hansjakob; Schmid, Patrick; Bernasconi, Enos; Stoeckle, Marcel; Kahlert, Christian; Trkola, Alexandra; Kouyos, Roger D; Tarr, Philip; Marzolini, Catia; Wandeler, Gilles; Fellay, Jacques; Bucher, Heiner; Yerly, Sabine; Suter, Franziska; Hirsch, Hans; Huber, Michael; Dollenmaier, Günter; Perreau, Matthieu; [...]

    Cohort Profile Update: The Swiss HIV Cohort Study (SHCS)

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    Oxford University Press (OUP), 2022

    Published in: International Journal of Epidemiology