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Voges, Jan [Author]; Paridaens, Tom [Author]; Müntefering, Fabian [Author]; Mainzer, Liudmila S. [Author]; Bliss, Brian [Author]; Yang, Mingyu [Author]; Ochoa, Idoia [Author]; Fostier, Jan [Author]; Ostermann, Jörn [Author]; Hernaez, Mikel [Author]

GABAC : An arithmetic coding solution for genomic data - [published Version]

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Oxford : Oxford Univ. Press, 2020

Published in: Bioinformatics 36 (2020), Nr. 7
Voges, Jan [Author]; Paridaens, Tom [Author]; Müntefering, Fabian [Author]; Mainzer, Liudmila S. [Author]; Bliss, Brian [Author]; Yang, Mingyu [Author]; Ochoa, Idoia [Author]; Fostier, Jan [Author]; Ostermann, Jörn [Author]; Hernaez, Mikel [Author]

GABAC : An arithmetic coding solution for genomic data

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Hannover: Gottfried Wilhelm Leibniz Universität Hannover, 2020 ; Hannover: Technische Informationsbibliothek (TIB), 2020

Published in: Bioinformatics ; 36 (2020), Nr. 7, S. 2275-2277
Fostier, Jan

BLAMM: BLAS-based algorithm for finding position weight matrix occurrences in DNA sequences on CPUs and GPUs

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Springer Science and Business Media LLC, 2020

Published in: BMC Bioinformatics, 21 (2020) S2
Fostier, Jan

Bioinformatics and Biomedical Engineering: A BLAS-Based Algorithm for Finding Position Weight Matrix Occurrences in DNA Sequences on CPUs and GPUs

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Springer International Publishing, 2018

Published in: Bioinformatics and Biomedical Engineering (2018), Seite 439-449
Fostier, Jan; Olyslager, Femke

An Open-Source Implementation for Full-Wave 2D Scattering by Million-Wavelength-Size Objects

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Institute of Electrical and Electronics Engineers (IEEE), 2010

Published in: IEEE Antennas and Propagation Magazine, 52 (2010) 5, Seite 23-34
Fostier, Jan; Olyslager, Femke

An Asynchronous Parallel MLFMA for Scattering at Multiple Dielectric Objects

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Institute of Electrical and Electronics Engineers (IEEE), 2008

Published in: IEEE Transactions on Antennas and Propagation, 56 (2008) 8, Seite 2346-2355
Steyaert, Aranka; Audenaert, Pieter; Fostier, Jan

Improved Node and Arc Multiplicity Estimation in De Bruijn Graphs Using Approximate Inference in Conditional Random Fields

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Institute of Electrical and Electronics Engineers (IEEE), 2023

Published in: IEEE/ACM Transactions on Computational Biology and Bioinformatics, 20 (2023) 3, Seite 1995-2006
Renders, Luca; Depuydt, Lore; Fostier, Jan

Bioinformatics and Biomedical Engineering: Approximate Pattern Matching Using Search Schemes and In-Text Verification

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Springer International Publishing, 2022

Published in: Bioinformatics and Biomedical Engineering (2022), Seite 419-435
Renders, Luca; Marchal, Kathleen; Fostier, Jan

Dynamic partitioning of search patterns for approximate pattern matching using search schemes

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Elsevier BV, 2021

Published in: iScience, 24 (2021) 7, Seite 102687
Steyaert, Aranka; Audenaert, Pieter; Fostier, Jan

Accurate determination of node and arc multiplicities in de bruijn graphs using conditional random fields

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Springer Science and Business Media LLC, 2020

Published in: BMC Bioinformatics, 21 (2020) 1
Miclotte, Giles; Martens, Koen; Fostier, Jan

Computational assessment of the feasibility of protonation-based protein sequencing

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Public Library of Science (PLoS), 2020

Published in: PLOS ONE, 15 (2020) 9, Seite e0238625
Vanavermaete, David; Maenhout, Steven; Fostier, Jan; De Baets, Bernard

Oracle selection provides insight into how far off practice is from Utopia in plant breeding

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Frontiers Media SA, 2023

Published in: Frontiers in Plant Science, 14 (2023)
Depuydt, Lore; Renders, Luca; Abeel, Thomas; Fostier, Jan

Pan-genome de Bruijn graph using the bidirectional FM-index

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Springer Science and Business Media LLC, 2023

Published in: BMC Bioinformatics, 24 (2023) 1
Vanavermaete, David; Fostier, Jan; Maenhout, Steven; De Baets, Bernard

Adaptive scoping: balancing short- and long-term genetic gain in plant breeding

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Springer Science and Business Media LLC, 2022

Published in: Euphytica, 218 (2022) 8
Rahmani, Razgar Seyed; Decap, Dries; Fostier, Jan; Marchal, Kathleen

BLSSpeller to discover novel regulatory motifs in maize

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Oxford University Press (OUP), 2022

Published in: DNA Research, 29 (2022) 4
Vanavermaete, David; Fostier, Jan; Maenhout, Steven; De Baets, Bernard

Deep scoping: a breeding strategy to preserve, reintroduce and exploit genetic variation

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Springer Science and Business Media LLC, 2021

Published in: Theoretical and Applied Genetics, 134 (2021) 12, Seite 3845-3861
Giles Miclotte; Koen Martens; Jan Fostier; Wenfei Li

Computational assessment of the feasibility of protonation-based protein sequencing

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2020

Published in: PLoS ONE, 15 (2020) 9
Vanavermaete, David; Fostier, Jan; Maenhout, Steven; De Baets, Bernard

Preservation of Genetic Variation in a Breeding Population for Long-Term Genetic Gain

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Oxford University Press (OUP), 2020

Published in: G3 Genes|Genomes|Genetics, 10 (2020) 8, Seite 2753-2762
Herzeel, Charlotte; Costanza, Pascal; Decap, Dries; Fostier, Jan; Verachtert, Wilfried

elPrep 4: A multithreaded framework for sequence analysis

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Public Library of Science (PLoS), 2019

Published in: PLOS ONE, 14 (2019) 2, Seite e0209523
Heydari, Mahdi; Miclotte, Giles; Van de Peer, Yves; Fostier, Jan

Illumina error correction near highly repetitive DNA regions improves de novo genome assembly

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Springer Science and Business Media LLC, 2019

Published in: BMC Bioinformatics, 20 (2019) 1

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