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Fronza, Raffaele [Author]

Bioinformatic methods in applied genomic research

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[Erscheinungsort nicht ermittelbar]: Alma Mater Studiorum - Università di Bologna, 2011
Petri, Karl [Author]; Fronza, Raffaele [Author]; Gabriel, Richard [Author]; Schmidt, Manfred [Author]

Comparative next-generation sequencing of adeno-associated virus inverted terminal repeats

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May 2014

Published in: BioTechniques ; 56(2014), 5, Seite 269-273
Afzal, Saira [Author]; Wilkening, Stefan [Author]; Kalle, Christof von [Author]; Schmidt, Manfred [Author]; Fronza, Raffaele [Author]

GENE-IS : time-efficient and accurate analysis of viral integration events in large-scale gene therapy data

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2017

Published in: Molecular therapy. Nucleic Acids ; 6(2017), Seite 133-139
Sundarasetty, Bala Sai [Author]; Ruggiero, Eliana [Author]; Fronza, Raffaele [Author]; Schmidt, Manfred [Author]; Kalle, Christof von [Author]

Generation of lentivirus-induced dendritic cells under GMP-compliant conditions for adaptive immune reconstitution against cytomegalovirus after stem cell transplantation

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22 July 2015

Published in: Journal of translational medicine ; 13(2015) Artikel-Nummer 240, 19 Seiten
Petri, Karl [Author]; Gabriel, Richard [Author]; Fronza, Raffaele [Author]; Afzal, Saira [Author]; Käppel, Christine [Author]; Schmidt, Manfred [Author]

Presence of a trs-like motif promotes rep-mediated wild-type adeno-associated virus type 2 integration

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July 2015

Published in: Journal of virology ; 89(2015), 14, Seite 7428-7432
Ruggiero, Eliana [Author]; Nicolay, Jan Peter [Author]; Fronza, Raffaele [Author]; Arens, Anne [Author]; Paruzynski, Anna [Author]; Nowrouzi, Ali [Author]; Lulay, Christina [Author]; Schneider, Sven [Author]; Goerdt, Sergij [Author]; Glimm, Hanno [Author]; Schmidt, Manfred [Author]; Kalle, Christof von [Author]

High-resolution analysis of the human T-cell receptor repertoire

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1 September 2015

Published in: Nature Communications ; 6(2015) Artikel-Nummer 8081, 7 Seiten
Gießler, Klara Monika [Author]; Kleinheinz, Kortine [Author]; Hübschmann, Daniel [Author]; Balasubramanian, Gnana Prakash [Author]; Dubash, Taronish Dorab [Author]; Dieter, Sebastian M. [Author]; Siegl, Christine [Author]; Herbst, Friederike [Author]; Weber, Sarah [Author]; Hoffmann, Christopher M. [Author]; Fronza, Raffaele [Author]; Buchhalter, Ivo [Author]; Paramasivam, Nagarajan [Author]; Eils, Roland [Author]; Schmidt, Manfred [Author]; Kalle, Christof von [Author]; Schneider, Martin [Author]; Ulrich, Alexis [Author]; Scholl, Claudia [Author]; Fröhling, Stefan [Author]; Weichert, Wilko [Author]; Brors, Benedikt [Author]; Schlesner, Matthias [Author]; Ball, Claudia R. [Author];

Genetic subclone architecture of tumor clone-initiating cells in colorectal cancer

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2017

Published in: Journal of experimental medicine ; 214(2017), 7, Seite 2073-2088
Afzal, Saira; Fronza, Raffaele; Schmidt, Manfred

VSeq-Toolkit: Comprehensive Computational Analysis of Viral Vectors in Gene Therapy

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Elsevier BV, 2020

Published in: Molecular Therapy - Methods & Clinical Development, 17 (2020), Seite 752-757
Wang, Wei; Fronza, Raffaele; Schmidt, Manfred

The Clonal Fate of Live Cells

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Elsevier BV, 2017

Published in: Molecular Therapy - Methods & Clinical Development, 5 (2017), Seite 93-95
Fronza, Raffaele; Lusic, Marina; Schmidt, Manfred; Lucic, Bojana

Spatial–Temporal Variations in Atmospheric Factors Contribute to SARS-CoV-2 Outbreak

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MDPI AG, 2020

Published in: Viruses, 12 (2020) 6, Seite 588
Fronza, Raffaele; Vasciaveo, Alessandro; Benso, Alfredo; Schmidt, Manfred

A Graph Based Framework to Model Virus Integration Sites

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Elsevier BV, 2016

Published in: Computational and Structural Biotechnology Journal, 14 (2016), Seite 69-77
Fronza, Raffaele; Tramonti, Michele; Atchley, William R; Nardini, Christine

Brain cancer prognosis: independent validation of a clinical bioinformatics approach

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ClinTransMed, AB, 2012

Published in: Journal of Clinical Bioinformatics, 2 (2012) 1, Seite 2
Fronza, Raffaele; Tramonti, Michele; Atchley, William R; Nardini, Christine

Joint analysis of transcriptional and post- transcriptional brain tumor data: searching for emergent properties of cellular systems

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Springer Science and Business Media LLC, 2011

Published in: BMC Bioinformatics, 12 (2011) 1
Afzal, Saira; Gil-Farina, Irene; Gabriel, Richard; Ahmad, Shahzad; von Kalle, Christof; Schmidt, Manfred; Fronza, Raffaele

Systematic comparative study of computational methods for T-cell receptor sequencing data analysis

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Oxford University Press (OUP), 2019

Published in: Briefings in Bioinformatics, 20 (2019) 1, Seite 222-234
Afzal, Saira; Wilkening, Stefan; von Kalle, Christof; Schmidt, Manfred; Fronza, Raffaele

GENE-IS: Time-Efficient and Accurate Analysis of Viral Integration Events in Large-Scale Gene Therapy Data

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Elsevier BV, 2017

Published in: Molecular Therapy - Nucleic Acids, 6 (2017), Seite 133-139
Afzal, Saira; Ahmad, Shahzad; Gabriel, Richard; Ruggiero, Eliana; von Kalle, Christof; Schmidt, Manfred; Fronza, Raffaele

232. Generalized Entropy Based Clonal Diversity Estimation of TCR Repertoire

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Elsevier BV, 2016

Published in: Molecular Therapy, 24 (2016), Seite S91
Wilkening, Stefan; Afzal, Saira; Senís, Elena; Fronza, Raffaele; von Kalle, Christof; Grimm, Dirk; Schmidt, Manfred

470. New Insights into rAAV Integration Mechanisms by Targeted Enrichment Sequencing

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Elsevier BV, 2016

Published in: Molecular Therapy, 24 (2016), Seite S186
Vasciaveo, Alessandro; Velevska, Ivana; Politano, Gianfranco; Savino, Alessandro; Schmidt, Manfred; Fronza, Raffaele

Common integration sites of published datasets identified using a graph-based framework

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Elsevier BV, 2016

Published in: Computational and Structural Biotechnology Journal, 14 (2016), Seite 87-90
Wilkening, Stefan; Afzal, Saira; Fronza, Raffaele; von Kalle, Christof; Schmidt, Manfred

127. Detection of Vector Integration Sites by Targeted Sequencing

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Elsevier BV, 2015

Published in: Molecular Therapy, 23 (2015), Seite S52
Afzal, Saira; Fronza, Raffaele; Wilkening, Stefan; Bartholomä, Cynthia; von Kalle, Christof; Schmidt, Manfred

339. GENIS: A Bioinformatics Tool for Reliable and Automated Genome Insertion Site Analysis

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Elsevier BV, 2015

Published in: Molecular Therapy, 23 (2015), Seite S135-S136

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