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  1. Lum, Fok‐Moon; Narang, Vipin; Hue, Susan; Chen, Jie; McGovern, Naomi; Rajarethinam, Ravisankar; Tan, Jeslin JL; Amrun, Siti Naqiah; Chan, Yi‐Hao; Lee, Cheryl YP; Chua, Tze‐Kwang; Yee, Wearn‐Xin; Yeo, Nicholas KW; Tan, Thiam‐Chye; Liu, Xuan; Haldenby, Sam; Leo, Yee‐sin; Ginhoux, Florent; Chan, Jerry KY; Hiscox, Julian; Chong, Chia‐Yin; Ng, Lisa FP

    Immunological observations and transcriptomic analysis of trimester‐specific full‐term placentas from three Zika virus‐infected women

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    Wiley, 2019

    Published in: Clinical & Translational Immunology, 8 (2019) 11

  2. Carroll, Miles W.; Haldenby, Sam; Rickett, Natasha Y.; Pályi, Bernadett; Garcia-Dorival, Isabel; Liu, Xuan; Barker, Gary; Bore, Joseph Akoi; Koundouno, Fara Raymond; Williamson, E. Diane; Laws, Thomas R.; Kerber, Romy; Sissoko, Daouda; Magyar, Nóra; Di Caro, Antonino; Biava, Mirella; Fletcher, Tom E.; Sprecher, Armand; Ng, Lisa F. P.; Rénia, Laurent; Magassouba, N’faly; Günther, Stephan; Wölfel, Roman; Stoecker, Kilian; [...]

    Deep Sequencing of RNA from Blood and Oral Swab Samples Reveals the Presence of Nucleic Acid from a Number of Pathogens in Patients with Acute Ebola Virus Disease and Is Consistent with Bacterial Translocation across the Gut

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    American Society for Microbiology, 2017

    Published in: mSphere, 2 (2017) 4

  3. Liu, Xuan; Speranza, Emily; Muñoz-Fontela, César; Haldenby, Sam; Rickett, Natasha Y.; Garcia-Dorival, Isabel; Fang, Yongxiang; Hall, Yper; Zekeng, Elsa-Gayle; Lüdtke, Anja; Xia, Dong; Kerber, Romy; Krumkamp, Ralf; Duraffour, Sophie; Sissoko, Daouda; Kenny, John; Rockliffe, Nichola; Williamson, E. Diane; Laws, Thomas R.; N’Faly, Magassouba; Matthews, David A.; Günther, Stephan; Cossins, Andrew R.; Sprecher, Armand; [...]

    Transcriptomic signatures differentiate survival from fatal outcomes in humans infected with Ebola virus

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    Springer Science and Business Media LLC, 2017

    Published in: Genome Biology, 18 (2017) 1

  4. Moore, Shona C.; Penrice-Randal, Rebekah; Alruwaili, Muhannad; Randle, Nadine; Armstrong, Stuart; Hartley, Catherine; Haldenby, Sam; Dong, Xiaofeng; Alrezaihi, Abdulrahman; Almsaud, Mai; Bentley, Eleanor; Clark, Jordan; García-Dorival, Isabel; Gilmore, Paul; Han, Ximeng; Jones, Benjamin; Luu, Lisa; Sharma, Parul; Shawli, Ghada; Sun, Yani; Zhao, Qin; Pullan, Steven T.; Carter, Daniel P.; Bewley, Kevin; [...]

    Amplicon-Based Detection and Sequencing of SARS-CoV-2 in Nasopharyngeal Swabs from Patients With COVID-19 and Identification of Deletions in the Viral Genome That Encode Proteins Involved in Interferon Antagonism

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    MDPI AG, 2020

    Published in: Viruses, 12 (2020) 10, Seite 1164

  5. Goldswain, Hannah; Dong, Xiaofeng; Penrice-Randal, Rebekah; Alruwaili, Muhannad; Shawli, Ghada T.; Prince, Tessa; Williamson, Maia Kavanagh; Raghwani, Jayna; Randle, Nadine; Jones, Benjamin; Donovan-Banfield, I’ah; Salguero, Francisco J.; Tree, Julia A.; Hall, Yper; Hartley, Catherine; Erdmann, Maximilian; Bazire, James; Jearanaiwitayakul, Tuksin; Semple, Malcolm G.; Openshaw, Peter J. M.; Baillie, J. Kenneth; Baillie, J. Kenneth; Semple, Malcolm G.; Openshaw, Peter J. M.; [...]

    The P323L substitution in the SARS-CoV-2 polymerase (NSP12) confers a selective advantage during infection

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    Springer Science and Business Media LLC, 2023

    Published in: Genome Biology, 24 (2023) 1

  6. Millar, Jonathan E.; Neyton, Lucile; Seth, Sohan; Dunning, Jake; Merson, Laura; Murthy, Srinivas; Russell, Clark D.; Keating, Sean; Swets, Maaike; Sudre, Carole H.; Spector, Timothy D.; Ourselin, Sebastien; Steves, Claire J.; Wolf, Jonathan; Docherty, Annemarie B.; Harrison, Ewen M.; Openshaw, Peter J. M.; Semple, Malcolm G.; Baillie, J. Kenneth; Baillie, J. Kenneth; Semple, Malcolm G.; Openshaw, Peter J. M.; Carson, Gail; Alex, Beatrice; [...]

    Distinct clinical symptom patterns in patients hospitalised with COVID-19 in an analysis of 59,011 patients in the ISARIC-4C study

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    Springer Science and Business Media LLC, 2022

    Published in: Scientific Reports, 12 (2022) 1

  7. Närhi, Fiina; Moonesinghe, S Ramani; Shenkin, Susan D; Drake, Thomas M; Mulholland, Rachel H; Donegan, Cara; Dunning, Jake; Fairfield, Cameron J; Girvan, Michelle; Hardwick, Hayley E; Ho, Antonia; Leeming, Gary; Nguyen-Van-Tam, Jonathan S; Pius, Riinu; Russell, Clark D; Shaw, Catherine A; Spencer, Rebecca G; Turtle, Lance; Openshaw, Peter J M; Baillie, J Kenneth; Harrison, Ewen M; Semple, Malcolm G; Docherty, Annemarie B; Baillie, J Kenneth; [...]

    Implementation of corticosteroids in treatment of COVID-19 in the ISARIC WHO Clinical Characterisation Protocol UK: prospective, cohort study

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    Elsevier BV, 2022

    Published in: The Lancet Digital Health, 4 (2022) 4, Seite e220-e234

  8. Vink, Elen; Davis, Chris; MacLean, Alasdair; Pascall, David; McDonald, Sarah E; Gunson, Rory; Hardwick, Hayley E; Oosthuyzen, Wilna; Openshaw, Peter J M; Baillie, J Kenneth; Semple, Malcolm G; Ho, Antonia; Baillie, J Kenneth; Openshaw, Peter J M; Semple, Malcolm G; Barclay, Wendy S; Bogaert, Debby; Chand, Meera; Chechi, Kanta; Cooke, Graham S; Filipe, Ana da Silva; Silva, Thushan de; Docherty, Annemarie B; Correia, Gonçalo dos Santos; [...]

    Viral Coinfections in Hospitalized Coronavirus Disease 2019 Patients Recruited to the International Severe Acute Respiratory and Emerging Infections Consortium WHO Clinical Characterisation Protocol UK Study

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    Oxford University Press (OUP), 2022

    Published in: Open Forum Infectious Diseases, 9 (2022) 11

  9. Leclerc, Quentin J.; Fuller, Naomi M.; Keogh, Ruth H.; Diaz-Ordaz, Karla; Sekula, Richard; Semple, Malcolm G.; Baillie, J. Kenneth; Semple, Malcolm G.; Openshaw, Peter J. M.; Carson, Gail; Alex, Beatrice; Bach, Benjamin; Barclay, Wendy S.; Bogaert, Debby; Chand, Meera; Cooke, Graham S.; Docherty, Annemarie B.; Dunning, Jake; da Silva Filipe, Ana; Fletcher, Tom; Green, Christopher A.; Harrison, Ewen M.; Hiscox, Julian A.; Ho, Antonia Ying Wai; [...]

    Importance of patient bed pathways and length of stay differences in predicting COVID-19 hospital bed occupancy in England

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    Springer Science and Business Media LLC, 2021

    Published in: BMC Health Services Research, 21 (2021) 1

  10. Sullivan, Michael K; Lees, Jennifer S; Drake, Thomas M; Docherty, Annemarie B; Oates, Georgia; Hardwick, Hayley E; Russell, Clark D; Merson, Laura; Dunning, Jake; Nguyen-Van-Tam, Jonathan S; Openshaw, Peter; Harrison, Ewen M; Baillie, J Kenneth; Baillie, J Kenneth; Semple, Malcolm G; Openshaw, Peter J M; Carson, Gail; Alex, Beatrice; Bach, Benjamin; Barclay, Wendy S; Bogaert, Debby; Chand, Meera; Cooke, Graham S; Docherty, Annemarie B; [...]

    Acute kidney injury in patients hospitalized with COVID-19 from the ISARIC WHO CCP-UK Study: a prospective, multicentre cohort study

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    Oxford University Press (OUP), 2022

    Published in: Nephrology Dialysis Transplantation, 37 (2022) 2, Seite 271-284

  11. Relph, Katharine A; Russell, Clark D; Fairfield, Cameron J; Turtle, Lance; de Silva, Thushan I; Siggins, Matthew K; Drake, Thomas M; Thwaites, Ryan S; Abrams, Simon; Moore, Shona C; Hardwick, Hayley E; Oosthuyzen, Wilna; Harrison, Ewen M; Docherty, Annemarie B; Openshaw, Peter J M; Baillie, J Kenneth; Semple, Malcolm G; Ho, Antonia; Baillie, J Kenneth; Semple, Malcolm G; Openshaw, Peter J M; Carson, Gail; Alex, Beatrice; Bach, Benjamin; [...]

    Procalcitonin Is Not a Reliable Biomarker of Bacterial Coinfection in People With Coronavirus Disease 2019 Undergoing Microbiological Investigation at the Time of Hospital Admission

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    Oxford University Press (OUP), 2022

    Published in: Open Forum Infectious Diseases, 9 (2022) 5

  12. Russell, Clark D; Fairfield, Cameron J; Drake, Thomas M; Turtle, Lance; Seaton, R Andrew; Wootton, Dan G; Sigfrid, Louise; Harrison, Ewen M; Docherty, Annemarie B; de Silva, Thushan I; Egan, Conor; Pius, Riinu; Hardwick, Hayley E; Merson, Laura; Girvan, Michelle; Dunning, Jake; Nguyen-Van-Tam, Jonathan S; Openshaw, Peter J M; Baillie, J Kenneth; Semple, Malcolm G; Ho, Antonia; Baillie, J Kenneth; Semple, Malcolm G; Openshaw, Peter JM; [...]

    Co-infections, secondary infections, and antimicrobial use in patients hospitalised with COVID-19 during the first pandemic wave from the ISARIC WHO CCP-UK study: a multicentre, prospective cohort study

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    Elsevier BV, 2021

    Published in: The Lancet Microbe, 2 (2021) 8, Seite e354-e365

  13. Drake, Thomas M.; Docherty, Annemarie B.; Harrison, Ewen M.; Quint, Jennifer K.; Adamali, Huzaifa; Agnew, Sarah; Babu, Suresh; Barber, Christopher M.; Barratt, Shaney; Bendstrup, Elisabeth; Bianchi, Stephen; Villegas, Diego Castillo; Chaudhuri, Nazia; Chua, Felix; Coker, Robina; Chang, William; Crawshaw, Anjali; Crowley, Louise E.; Dosanjh, Davinder; Fiddler, Christine A.; Forrest, Ian A.; George, Peter M.; Gibbons, Michael A.; Groom, Katherine; [...]

    Outcome of Hospitalization for COVID-19 in Patients with Interstitial Lung Disease. An International Multicenter Study

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    American Thoracic Society, 2020

    Published in: American Journal of Respiratory and Critical Care Medicine, 202 (2020) 12, Seite 1656-1665

  14. Michael, Benedict D.; Dunai, Cordelia; Needham, Edward J.; Tharmaratnam, Kukatharmini; Williams, Robyn; Huang, Yun; Boardman, Sarah A.; Clark, Jordan J.; Sharma, Parul; Subramaniam, Krishanthi; Wood, Greta K.; Collie, Ceryce; Digby, Richard; Ren, Alexander; Norton, Emma; Leibowitz, Maya; Ebrahimi, Soraya; Fower, Andrew; Fox, Hannah; Tato, Esteban; Ellul, Mark A.; Sunderland, Geraint; Held, Marie; Hetherington, Claire; [...]

    Author Correction: Para-infectious brain injury in COVID-19 persists at follow-up despite attenuated cytokine and autoantibody responses

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    Springer Science and Business Media LLC, 2024

    Published in: Nature Communications, 15 (2024) 1

  15. Michael, Benedict D.; Dunai, Cordelia; Needham, Edward J.; Tharmaratnam, Kukatharmini; Williams, Robyn; Huang, Yun; Boardman, Sarah A.; Clark, Jordan J.; Sharma, Parul; Subramaniam, Krishanthi; Wood, Greta K.; Collie, Ceryce; Digby, Richard; Ren, Alexander; Norton, Emma; Leibowitz, Maya; Ebrahimi, Soraya; Fower, Andrew; Fox, Hannah; Tato, Esteban; Ellul, Mark A.; Sunderland, Geraint; Held, Marie; Hetherington, Claire; [...]

    Para-infectious brain injury in COVID-19 persists at follow-up despite attenuated cytokine and autoantibody responses

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    Springer Science and Business Media LLC, 2023

    Published in: Nature Communications, 14 (2023) 1

  16. Dejnirattisai, Wanwisa; Huo, Jiandong; Zhou, Daming; Zahradník, Jiří; Supasa, Piyada; Liu, Chang; Duyvesteyn, Helen M.E.; Ginn, Helen M.; Mentzer, Alexander J.; Tuekprakhon, Aekkachai; Nutalai, Rungtiwa; Wang, Beibei; Dijokaite, Aiste; Khan, Suman; Avinoam, Ori; Bahar, Mohammad; Skelly, Donal; Adele, Sandra; Johnson, Sile Ann; Amini, Ali; Ritter, Thomas G.; Mason, Chris; Dold, Christina; Pan, Daniel; [...]

    SARS-CoV-2 Omicron-B.1.1.529 leads to widespread escape from neutralizing antibody responses

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    Elsevier BV, 2022

    Published in: Cell, 185 (2022) 3, Seite 467-484.e15

  17. Volz, Erik; Hill, Verity; McCrone, John T.; Price, Anna; Jorgensen, David; O’Toole, Áine; Southgate, Joel; Johnson, Robert; Jackson, Ben; Nascimento, Fabricia F.; Rey, Sara M.; Nicholls, Samuel M.; Colquhoun, Rachel M.; da Silva Filipe, Ana; Shepherd, James; Pascall, David J.; Shah, Rajiv; Jesudason, Natasha; Li, Kathy; Jarrett, Ruth; Pacchiarini, Nicole; Bull, Matthew; Geidelberg, Lily; Siveroni, Igor; [...]

    Evaluating the Effects of SARS-CoV-2 Spike Mutation D614G on Transmissibility and Pathogenicity

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    Elsevier BV, 2021

    Published in: Cell, 184 (2021) 1, Seite 64-75.e11

  18. Kemp, Steven A.; Collier, Dami A.; Datir, Rawlings P.; Ferreira, Isabella A. T. M.; Gayed, Salma; Jahun, Aminu; Hosmillo, Myra; Rees-Spear, Chloe; Mlcochova, Petra; Lumb, Ines Ushiro; Roberts, David J.; Chandra, Anita; Temperton, Nigel; Baker, Stephen; Dougan, Gordon; Hess, Christoph; Kingston, Nathalie; Lehner, Paul J.; Lyons, Paul A.; Matheson, Nicholas J.; Owehand, Willem H.; Saunders, Caroline; Summers, Charlotte; Thaventhiran, James E. D.; [...]

    Author Correction: SARS-CoV-2 evolution during treatment of chronic infection

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    Springer Science and Business Media LLC, 2022

    Published in: Nature, 608 (2022) 7922, Seite E23-E23