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Heenan, Patrick [Editor]; Lamontagne, Monique [Other]

The Southeast Asia handbook

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London [u.a.]: Fitzroy Dearborn, 2001

Published in: Regional handbooks of economic development
Hoadley, John W. [Author]

Mica deposits of Canada

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Ottawa: Geological Survey of Canada, 1960

Published in: Geological Survey of Canada: Economic geology report ; 19
Smith, Brian C.; Anderson, Mark A.; Hoadley, Kelly A.; Keck, James L.; Cleland, W. Wallace; Denu, John M.

Structural and Kinetic Isotope Effect Studies of Nicotinamidase (Pnc1) from Saccharomyces cerevisiae

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American Chemical Society (ACS), 2012

Published in: Biochemistry
Chen, Ken; Navin, Nicholas E; Wang, Yong; Schmidt, Heather K; Wallis, John W; Niu, Beifang; Fan, Xian; Zhao, Hao; McLellan, Michael D; Hoadley, Katherine A; Mardis, Elaine R; Ley, Timothy J; Perou, Charles M; Wilson, Richard K; Ding, Li

BreakTrans: uncovering the genomic architecture of gene fusions

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Springer Science and Business Media LLC, 2013

Published in: Genome Biology
Malta, Tathiane M.; Sokolov, Artem; Gentles, Andrew J.; Burzykowski, Tomasz; Poisson, Laila; Weinstein, John; Kamińska, Bożena; Huelsken, Joerg; Omberg, Larsson; Gevaert, Olivier; Colaprico, Antonio; Czerwińska, Patrycja; Mazurek, Sylwia; Mishra, Lopa; Heyn, Holger; Krasnitz, Alex; Godwin, Andrew K.; Lazar, Alexander J.; Network, The Cancer Genome Atlas Research; Stuart, Joshua M.; Hoadley, Katherine; Laird, Peter W.; Noushmehr, Houtan; Wiznerowicz, Maciej

Abstract LB-373: Comprehensive analysis of cancer stemness

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American Association for Cancer Research (AACR), 2018

Published in: Cancer Research
Lindström, Linda S; Yau, Christina; Czene, Kamila; Thompson, Carlie K; Hoadley, Katherine A; van't Veer, Laura J; Balassanian, Ron; Bishop, John W; Carpenter, Philip M; Chen, Yunn-Yi; Datnow, Brian; Hasteh, Farnaz; Krings, Gregor; Lin, Fritz; Zhang, Yanhong; Nordenskjöld, Bo; Stål, Olle; Benz, Christopher C; Fornander, Tommy; Borowsky, Alexander D; Esserman, Laura J

Intratumor Heterogeneity of the Estrogen Receptor and the Long-term Risk of Fatal Breast Cancer

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Oxford University Press (OUP), 2018

Published in: JNCI: Journal of the National Cancer Institute
Lerner, Seth P.; Robertson, Gordon; Kim, Jaegil; Cherniack, Andrew; Guo, Guangwu; Akbani, Rehan; Kanchi, Rupa S; Hoadley, Katherine A.; Hinoue, Toshinori; Laird, Peter W.; Al-Ahmadie, Hikmat; Bellmunt, Joaquim; Castro, Mauro; Gordenin, Dmitry; Mills, Gordon B.; Sanchez-Vega, Francisco; Shukla, Sachet A; Gibb, Ewan A; Weinstein, John N.; Kwiatkowski, David J.

Comprehensive molecular characterization and analysis of muscle-invasive urothelial carcinomas

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American Society of Clinical Oncology (ASCO), 2017

Published in: Journal of Clinical Oncology
Lerner, Seth P.; Kim, Jaegil; Kwiatkowski, David J.; Getz, Gad; Weinstein, John N.; Cherniack, Andrew; Guo, Guangwu; Akbani, Rehan; Hoadley, Katherine A.; Kim, William Y.; Robertson, Gordon; Mungall, Andrew J.; Hinoue, Toshinori; Laird, Peter W.; Al-Ahmadie, Hikmat; Rosenberg, Jonathan E.; Bellmunt, Joaquim; Bajorin, Dean F.; Hansel, Donna E.; Creighton, Chad J.

Comprehensive characterization of 412 muscle invasive urothelial carcinomas: Final analysis of The Cancer Genome Atlas (TCGA) project

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American Society of Clinical Oncology (ASCO), 2016

Published in: Journal of Clinical Oncology
Weinstein, John N.; Kim, Jaegil; Creighton, Chad J.; Akbani, Rehan; Hoadley, Katherine A.; Kim, William Y.; Morgan, Margaret B.; Hinoue, Toshinori; Rosenberg, Jonathan E.; Bajorin, Dean F.; Hansel, Donna E.; Al-Ahmadie, Hikmat; Gordenin, Dmitry; Stuart, Joshua M.; Robertson, Gordon; Kucherlapati, Raju; Laird, Peter W.; Mills, Gordon B.; Kwiatkowski, David J.; Lerner, Seth P.

Comprehensive molecular profiling of urothelial bladder cancer at the DNA, RNA, and protein levels: A TCGA project

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American Society of Clinical Oncology (ASCO), 2014

Published in: Journal of Clinical Oncology
Weinstein, John N.; Kim, Jaegil; Creighton, Chad J.; Akbani, Rehan; Hoadley, Katherine A.; Kim, William Y.; Morgan, Margaret B.; Hinoue, Toshinori; Cherniack, Andrew; Su, Xiaoping; Mungall, Andrew J.; Ryan, Michael C.; Rosenberg, Jonathan E.; Bajorin, Dean F.; Czerniak, Bogdan; Hansel, Donna; Reuter, Victor E.; Robinson, Brian D.; Al-Ahmadie, Hikmat A.; Damrauer, Jeffrey S.; Zhang, Wei; Liu, Yuexin; Gordenin, Dmitry; Stuart, Joshua M.; [...]

Abstract 987: Comprehensive characterization of urothelial bladder cancer: a TCGA Project update

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American Association for Cancer Research (AACR), 2014

Published in: Cancer Research
Chambwe, Nyasha; Sayaman, Rosalyn W.; Hu, Donglei; Huntsman, Scott; Kemal, Anab; Caesar-Johnson, Samantha; Zenklusen, Jean C.; Ziv, Elad; Beroukhim, Rameen; Cherniack, Andrew D.; Carrot-Zhang, Jian; Berger, Ashton C.; Han, Seunghun; Meyerson, Matthew; Damrauer, Jeffrey S.; Hoadley, Katherine A.; Felau, Ina; Demchok, John A.; Mensah, Michael K.A.; Tarnuzzer, Roy; Wang, Zhining; Yang, Liming; Knijnenburg, Theo A.; Robertson, A. Gordon; [...]

Analysis of germline-driven ancestry-associated gene expression in cancers

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Elsevier BV, 2022

Published in: STAR Protocols
Carrot-Zhang, Jian; Han, Seunghun; Zhou, Wanding; Damrauer, Jeffrey S.; Kemal, Anab; Cherniack, Andrew D.; Beroukhim, Rameen; Berger, Ashton C.; Meyerson, Matthew; Hoadley, Katherine A.; Felau, Ina; Caesar-Johnson, Samantha; Demchok, John A.; Mensah, Michael K.A.; Tarnuzzer, Roy; Wang, Zhining; Yang, Liming; Zenklusen, Jean C.; Chambwe, Nyasha; Knijnenburg, Theo A.; Robertson, A. Gordon; Yau, Christina; Benz, Christopher; Huang, Kuan-lin; [...]

Analytical protocol to identify local ancestry-associated molecular features in cancer

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Elsevier BV, 2021

Published in: STAR Protocols
Carrot-Zhang, Jian; Chambwe, Nyasha; Damrauer, Jeffrey S.; Knijnenburg, Theo A.; Robertson, A. Gordon; Yau, Christina; Zhou, Wanding; Berger, Ashton C.; Huang, Kuan-lin; Newberg, Justin Y.; Mashl, R. Jay; Romanel, Alessandro; Sayaman, Rosalyn W.; Demichelis, Francesca; Felau, Ina; Frampton, Garrett M.; Han, Seunghun; Hoadley, Katherine A.; Kemal, Anab; Laird, Peter W.; Lazar, Alexander J.; Le, Xiuning; Oak, Ninad; Shen, Hui; [...]

Comprehensive Analysis of Genetic Ancestry and Its Molecular Correlates in Cancer

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Elsevier BV, 2020

Published in: Cancer Cell
Verhaak, Roel G.W.; Tamayo, Pablo; Yang, Ji-Yeon; Hubbard, Diana; Zhang, Hailei; Creighton, Chad J.; Fereday, Sian; Lawrence, Michael; Carter, Scott L.; Mermel, Craig H.; Kostic, Aleksandar D.; Etemadmoghadam, Dariush; Saksena, Gordon; Cibulskis, Kristian; Duraisamy, Sekhar; Levanon, Keren; Sougnez, Carrie; Tsherniak, Aviad; Gomez, Sebastian; Onofrio, Robert; Gabriel, Stacey; Chin, Lynda; Zhang, Nianxiang; Spellman, Paul T.; [...]

Prognostically relevant gene signatures of high-grade serous ovarian carcinoma

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American Society for Clinical Investigation, 2012

Published in: Journal of Clinical Investigation
Gao, Galen F.; Parker, Joel S.; Reynolds, Sheila M.; Silva, Tiago C.; Wang, Liang-Bo; Zhou, Wanding; Akbani, Rehan; Bailey, Matthew; Balu, Saianand; Berman, Benjamin P.; Brooks, Denise; Chen, Hu; Cherniack, Andrew D.; Demchok, John A.; Ding, Li; Felau, Ina; Gaheen, Sharon; Gerhard, Daniela S.; Heiman, David I.; Hernandez, Kyle M.; Hoadley, Katherine A.; Jayasinghe, Reyka; Kemal, Anab; Knijnenburg, Theo A.; [...]

Before and After: Comparison of Legacy and Harmonized TCGA Genomic Data Commons’ Data

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Elsevier BV, 2019

Published in: Cell Systems
Zhao, Xiaobei; Little, Paul; Hoyle, Alan P.; Pegna, Guillaume J.; Hayward, Michele C.; Ivanova, Anastasia; Parker, Joel S.; Marron, David L.; Soloway, Matthew G.; Jo, Heejoon; Salazar, Ashley H.; Papakonstantinou, Michael P.; Bouchard, Deeanna M.; Jefferys, Stuart R.; Hoadley, Katherine A.; Ollila, David W.; Frank, Jill S.; Thomas, Nancy E.; Googe, Paul B.; Ezzell, Ashley J.; Collichio, Frances A.; Lee, Carrie B.; Earp, H. Shelton; Sharpless, Norman E.; [...]

The Prognostic Significance of Low-Frequency Somatic Mutations in Metastatic Cutaneous Melanoma

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Frontiers Media SA, 2019

Published in: Frontiers in Oncology
Weinstein, John N.; Lerner, Seth P.; Kwiatkowski, David J.; Getz, Gad; Kim, Jaegil; Al-ahmadie, Hikmat A.; Cherniack, Andrew D.; Guo, Guangwu; Akbani, Rehan; Hoadley, Katherine A.; Kim, William Y.; Robertson, Gordon; Mungall, Andrew J.; Hinoue, Toshinori; Laird, Peter W.; Rosenberg, Jonathan E.; Bellmunt, Joaquim; Bajorin, Dean F.; Morgan, Margaret B.; Creighton, Chad J.; Gordenin, Dmitry; Stuart, Joshua M.; Su, Xiaoping; Ryan, Michael C.; [...]

Abstract 128: Comprehensive molecular characterization of 412 muscle-invasive urothelial bladder carcinomas: final analysis of The Cancer Genome Atlas (TCGA) project

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American Association for Cancer Research (AACR), 2016

Published in: Cancer Research
Weinstein, John N.; Kim, Jaegil; Creighton, Chad J.; Akbani, Rehan; Hoadley, Katherine A.; Kim, William Y.; Morgan, Margaret B.; Hinoue, Toshinori; Cherniack, Andrew; Su, Xiaoping; Mungall, Andrew J.; Ryan, Michael C.; Bajorin, Dean F.; Rosenberg, Jonathan E.; Czerniak, Bogdan; Hansel, Donna; Reuter, Victor E.; Robinson, Brian D.; Al-Ahmadie, Hikmat A.; Damrauer, Jeffrey S.; Zhang, Wei; Liu, Yuexin; Gordenin, Dmitry R.; Stuart, Joshua M.; [...]

Abstract 2969: Progress in The Cancer Genome Atlas bladder cancer project

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American Association for Cancer Research (AACR), 2015

Published in: Cancer Research
Hoadley, Katherine A.; Yau, Christina; Wolf, Denise M.; Cherniack, Andrew D.; Tamborero, David; Ng, Sam; Leiserson, Max D.M.; Niu, Beifang; McLellan, Michael D.; Uzunangelov, Vladislav; Zhang, Jiashan; Kandoth, Cyriac; Akbani, Rehan; Shen, Hui; Omberg, Larsson; Chu, Andy; Margolin, Adam A.; van’t Veer, Laura J.; Lopez-Bigas, Nuria; Laird, Peter W.; Raphael, Benjamin J.; Ding, Li; Robertson, A. Gordon; Byers, Lauren A.; [...]

Multiplatform Analysis of 12 Cancer Types Reveals Molecular Classification within and across Tissues of Origin

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Elsevier BV, 2014

Published in: Cell
Corces, M. Ryan; Granja, Jeffrey M.; Shams, Shadi; Louie, Bryan H.; Seoane, Jose A.; Zhou, Wanding; Silva, Tiago C.; Groeneveld, Clarice; Wong, Christopher K.; Cho, Seung Woo; Satpathy, Ansuman T.; Mumbach, Maxwell R.; Hoadley, Katherine A.; Robertson, A. Gordon; Sheffield, Nathan C.; Felau, Ina; Castro, Mauro A. A.; Berman, Benjamin P.; Staudt, Louis M.; Zenklusen, Jean C.; Laird, Peter W.; Curtis, Christina; Greenleaf, William J.; Chang, Howard Y.; [...]

The chromatin accessibility landscape of primary human cancers

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American Association for the Advancement of Science (AAAS), 2018

Published in: Science

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