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Marsico, Annalisa [Author]

Discovery and characterization of new structure and function motifs in alpha-helical transmembrane proteins with an application to interpret Single Molecule Force Spectroscopy data

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2010
Krakau, Sabrina [Author] ; Marsico, Annalisa [Contributor]; Backofen, Rolf [Contributor]

Statistical models to capture protein-RNA interaction footprints from truncation-based CLIP-seq data ; Statistische Modelle zur Detektion von Protein-RNA Interaktionen aus trunkierungsbasierten CLIP-seq Daten

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Freie Universität Berlin: Refubium (FU Berlin), 2020
Christodoulou, Eleni [Author] ; Schroeder, Michael [Degree supervisor]; Beyer, Andreas [Degree supervisor]; Marsico, Annalisa [Degree supervisor]

Detection of KRAS Synthetic Lethal Partners through Integration of Existing RNAi Screens

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Dresden: Saechsische Landesbibliothek- Staats- und Universitaetsbibliothek Dresden; Dresden: Technische Universität Dresden, 2014
Schroeder, Michael [Author]; Marsico, Annalisa [Author]; Henschel, Andreas [Author]; Winter, Christof [Author]; Tuukkanen, Anne [Author]; Vassilev, Boris [Author]; Scheubert, Kerstin [Author]

Structural fragment clustering reveals novel structural and functional motifs in α-helical transmembrane proteins

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London: BioMed Central, 2015
Herbel, Stefanie M. [Author]; Moyon, Lambert [Author]; Christ, Marvin [Author]; Elsayed, Eslam M. [Author]; Caffrey, Brian E. [Author]; Malmsheimer, Silke [Author]; Grin, Iwan [Author]; Hoffmann, Kerstin [Author]; Surmann, Kristin [Author]; Blankenburg, Sascha [Author]; Jung, Anna Lena [Author]; Herkt, Christina E. [Author]; Borsò, Marco [Author]; Bozdag, Beyza [Author]; Imhof, Axel [Author]; Becker, Anke [Author]; Wagner, Samuel [Author]; Bange, Gert [Author]; Völker, Uwe [Author]; Bertrams, Wilhelm [Author]; Marsico, Annalisa [Author]; Schmeck, Bernd [Author]

Screening for eukaryotic motifs in Legionella pneumophila reveals Smh1 as bacterial deacetylase of host histones

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Marburg: Philipps-Universität Marburg, 2023
Ntini, Evgenia; Marsico, Annalisa

Functional impacts of non-coding RNA processing on enhancer activity and target gene expression

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Oxford University Press (OUP), 2019

Published in: Journal of Molecular Cell Biology, 11 (2019) 10, Seite 868-879
Budach, Stefan; Marsico, Annalisa

pysster: classification of biological sequences by learning sequence and structure motifs with convolutional neural networks

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Oxford University Press (OUP), 2018

Published in: Bioinformatics, 34 (2018) 17, Seite 3035-3037
Krakau, Sabrina; Richard, Hugues; Marsico, Annalisa

PureCLIP: capturing target-specific protein–RNA interaction footprints from single-nucleotide CLIP-seq data

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Springer Science and Business Media LLC, 2017

Published in: Genome Biology, 18 (2017) 1
Salvatore, Marco; Horlacher, Marc; Marsico, Annalisa; Winther, Ole; Andersson, Robin

Transfer learning identifies sequence determinants of cell-type specific regulatory element accessibility

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Oxford University Press (OUP), 2023

Published in: NAR Genomics and Bioinformatics, 5 (2023) 2
Ntini, Evgenia; Budach, Stefan; Ørom, Ulf Andersson Vang; Marsico, Annalisa

Modeling the Nascent RNA Transcriptome With chrTT-Seq Identifies Distinctive Features of Long Non-Coding RNA Chromatin (Dis-)association

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Elsevier BV, 2022

Published in: SSRN Electronic Journal (2022)
Schulte-Sasse, Roman; Budach, Stefan; Hnisz, Denes; Marsico, Annalisa

Artificial Neural Networks and Machine Learning – ICANN 2019: Workshop and Special Sessions: Graph Convolutional Networks Improve the Prediction of Cancer Driver Genes

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Springer International Publishing, 2019

Published in: Artificial Neural Networks and Machine Learning – ICANN 2019: Workshop and Special Sessions (2019), Seite 658-668
Heller, David; Krestel, Ralf; Ohler, Uwe; Vingron, Martin; Marsico, Annalisa

ssHMM: extracting intuitive sequence-structure motifs from high-throughput RNA-binding protein data

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Oxford University Press (OUP), 2017

Published in: Nucleic Acids Research, 45 (2017) 19, Seite 11004-11018
Conrad, Thomas; Marsico, Annalisa; Gehre, Maja; Ørom, Ulf Andersson

Microprocessor Activity Controls Differential miRNA Biogenesis In Vivo

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Elsevier BV, 2015

Published in: Cell Reports, 10 (2015) 6, Seite 1020
Conrad, Thomas; Marsico, Annalisa; Gehre, Maja; Ørom, Ulf Andersson

Microprocessor Activity Controls Differential miRNA Biogenesis In Vivo

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Elsevier BV, 2014

Published in: Cell Reports, 9 (2014) 2, Seite 542-554
Prykhozhij, Sergey V.; Marsico, Annalisa; Meijsing, Sebastiaan H.

Zebrafish Expression Ontology of Gene Sets (ZEOGS): A Tool to Analyze Enrichment of Zebrafish Anatomical Terms in Large Gene Sets

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Mary Ann Liebert Inc, 2013

Published in: Zebrafish, 10 (2013) 3, Seite 303-315
Musilli, Marino; Marsico, Marco; Romanucci, Annalisa; Grampone, Francesco

Molar uprighting with mini screws: comparison among different systems and relative biomechanical analysis

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Elsevier BV, 2010

Published in: Progress in Orthodontics, 11 (2010) 2, Seite 166-173
Pacini, Guido; Dunkel, Ilona; Mages, Norbert; Mutzel, Verena; Timmermann, Bernd; Marsico, Annalisa; Schulz, Edda G.

Integrated analysis of Xist upregulation and X-chromosome inactivation with single-cell and single-allele resolution

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Springer Science and Business Media LLC, 2021

Published in: Nature Communications, 12 (2021) 1
Thiel, Denise; Conrad, Nataša Djurdjevac; Ntini, Evgenia; Peschutter, Ria X.; Siebert, Heike; Marsico, Annalisa

Identifying lncRNA-mediated regulatory modules via ChIA-PET network analysis

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Springer Science and Business Media LLC, 2019

Published in: BMC Bioinformatics, 20 (2019) 1
Bressin, Annkatrin; Schulte-Sasse, Roman; Figini, Davide; Urdaneta, Erika C; Beckmann, Benedikt M; Marsico, Annalisa

TriPepSVM: de novo prediction of RNA-binding proteins based on short amino acid motifs

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Oxford University Press (OUP), 2019

Published in: Nucleic Acids Research, 47 (2019) 9, Seite 4406-4417
Ntini, Evgenia; Louloupi, Annita; Liz, Julia; Muino, Jose M.; Marsico, Annalisa; Ørom, Ulf Andersson Vang

Long ncRNA A-ROD activates its target gene DKK1 at its release from chromatin

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Springer Science and Business Media LLC, 2018

Published in: Nature Communications, 9 (2018) 1

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