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  1. Hoepel, Willianne; Chen, Hung-Jen; Geyer, Chiara E.; Allahverdiyeva, Sona; Manz, Xue D.; de Taeye, Steven W.; Aman, Jurjan; Mes, Lynn; Steenhuis, Maurice; Griffith, Guillermo R.; Bonta, Peter I.; Brouwer, Philip J.M.; Caniels, Tom G.; van der Straten, Karlijn; Golebski, Korneliusz; Jonkers, René E.; Larsen, Mads D.; Linty, Federica; Nouta, Jan; van Roomen, Cindy P.A.A.; van Baarle, Frank E.H.P.; van Drunen, Cornelis M.; Wolbink, Gertjan; Vlaar, Alexander P.J.; [...]

    High titers and low fucosylation of early human anti–SARS-CoV-2 IgG promote inflammation by alveolar macrophages

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    American Association for the Advancement of Science (AAAS), 2021

    Published in: Science Translational Medicine

  2. Cheasley, Dane; Wakefield, Matthew J.; Ryland, Georgina L.; Allan, Prue E.; Alsop, Kathryn; Amarasinghe, Kaushalya C.; Ananda, Sumitra; Anglesio, Michael S.; Au-Yeung, George; Böhm, Maret; Bowtell, David D. L.; Brand, Alison; Chenevix-Trench, Georgia; Christie, Michael; Chiew, Yoke-Eng; Churchman, Michael; DeFazio, Anna; Demeo, Renee; Dudley, Rhiannon; Fairweather, Nicole; Fedele, Clare G.; Fereday, Sian; Fox, Stephen B.; Gilks, C Blake; [...]

    The molecular origin and taxonomy of mucinous ovarian carcinoma

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    Springer Science and Business Media LLC, 2019

    Published in: Nature Communications

  3. Kang, Eun Young; Cheasley, Dane; LePage, Cecile; Wakefield, Matthew J.; da Cunha Torres, Michelle; Rowley, Simone; Salazar, Carolina; Xing, Zhongyue; Allan, Prue; Bowtell, David D.L.; Mes-Masson, Anne-Marie; Provencher, Diane M.; Rahimi, Kurosh; Kelemen, Linda E.; Fasching, Peter A.; Doherty, Jennifer A.; Goodman, Marc T.; Goode, Ellen L.; Deen, Suha; Pharoah, Paul D.P.; Brenton, James D.; Sieh, Weiva; Mateoiu, Constantina; Sundfeldt, Karin; [...]

    Refined cut-off for TP53 immunohistochemistry improves prediction of TP53 mutation status in ovarian mucinous tumors: implications for outcome analyses

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    Elsevier BV, 2021

    Published in: Modern Pathology

  4. Abeshouse, Adam; Ahn, Jaeil; Akbani, Rehan; Ally, Adrian; Amin, Samirkumar; Andry, Christopher D.; Annala, Matti; Aprikian, Armen; Armenia, Joshua; Arora, Arshi; Auman, J. Todd; Balasundaram, Miruna; Balu, Saianand; Barbieri, Christopher E.; Bauer, Thomas; Benz, Christopher C.; Bergeron, Alain; Beroukhim, Rameen; Berrios, Mario; Bivol, Adrian; Bodenheimer, Tom; Boice, Lori; Bootwalla, Moiz S.; Borges dos Reis, Rodolfo; [...]

    The Molecular Taxonomy of Primary Prostate Cancer

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    Elsevier BV, 2015

    Published in: Cell

  5. Thorsson, Vésteinn; Gibbs, David L.; Brown, Scott D.; Wolf, Denise; Bortone, Dante S.; Ou Yang, Tai-Hsien; Porta-Pardo, Eduard; Gao, Galen F.; Plaisier, Christopher L.; Eddy, James A.; Ziv, Elad; Culhane, Aedin C.; Paull, Evan O.; Sivakumar, I.K. Ashok; Gentles, Andrew J.; Malhotra, Raunaq; Farshidfar, Farshad; Colaprico, Antonio; Parker, Joel S.; Mose, Lisle E.; Vo, Nam Sy; Liu, Jianfang; Liu, Yuexin; Rader, Janet; [...]

    The Immune Landscape of Cancer

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    Elsevier BV, 2019

    Published in: Immunity

  6. Ricketts, Christopher J.; De Cubas, Aguirre A.; Fan, Huihui; Smith, Christof C.; Lang, Martin; Reznik, Ed; Bowlby, Reanne; Gibb, Ewan A.; Akbani, Rehan; Beroukhim, Rameen; Bottaro, Donald P.; Choueiri, Toni K.; Gibbs, Richard A.; Godwin, Andrew K.; Haake, Scott; Hakimi, A. Ari; Henske, Elizabeth P.; Hsieh, James J.; Ho, Thai H.; Kanchi, Rupa S.; Krishnan, Bhavani; Kwiatkowski, David J.; Liu, Wenbin; Merino, Maria J.; [...]

    The Cancer Genome Atlas Comprehensive Molecular Characterization of Renal Cell Carcinoma

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    Elsevier BV, 2018

    Published in: Cell Reports

  7. Ricketts, Christopher J.; De Cubas, Aguirre A.; Fan, Huihui; Smith, Christof C.; Lang, Martin; Reznik, Ed; Bowlby, Reanne; Gibb, Ewan A.; Akbani, Rehan; Beroukhim, Rameen; Bottaro, Donald P.; Choueiri, Toni K.; Gibbs, Richard A.; Godwin, Andrew K.; Haake, Scott; Hakimi, A. Ari; Henske, Elizabeth P.; Hsieh, James J.; Ho, Thai H.; Kanchi, Rupa S.; Krishnan, Bhavani; Kwiatkowski, David J.; Liu, Wenbin; Merino, Maria J.; [...]

    The Cancer Genome Atlas Comprehensive Molecular Characterization of Renal Cell Carcinoma

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    Elsevier BV, 2018

    Published in: Cell Reports

  8. Hoadley, Katherine A.; Yau, Christina; Hinoue, Toshinori; Wolf, Denise M.; Lazar, Alexander J.; Drill, Esther; Shen, Ronglai; Taylor, Alison M.; Cherniack, Andrew D.; Thorsson, Vésteinn; Akbani, Rehan; Bowlby, Reanne; Wong, Christopher K.; Wiznerowicz, Maciej; Sanchez-Vega, Francisco; Robertson, A. Gordon; Schneider, Barbara G.; Lawrence, Michael S.; Noushmehr, Houtan; Malta, Tathiane M.; Stuart, Joshua M.; Benz, Christopher C.; Laird, Peter W.; Caesar-Johnson, Samantha J.; [...]

    Cell-of-Origin Patterns Dominate the Molecular Classification of 10,000 Tumors from 33 Types of Cancer

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    Elsevier BV, 2018

    Published in: Cell

  9. Liu, Yang; Sethi, Nilay S.; Hinoue, Toshinori; Schneider, Barbara G.; Cherniack, Andrew D.; Sanchez-Vega, Francisco; Seoane, Jose A.; Farshidfar, Farshad; Bowlby, Reanne; Islam, Mirazul; Kim, Jaegil; Chatila, Walid; Akbani, Rehan; Kanchi, Rupa S.; Rabkin, Charles S.; Willis, Joseph E.; Wang, Kenneth K.; McCall, Shannon J.; Mishra, Lopa; Ojesina, Akinyemi I.; Bullman, Susan; Pedamallu, Chandra Sekhar; Lazar, Alexander J.; Sakai, Ryo; [...]

    Comparative Molecular Analysis of Gastrointestinal Adenocarcinomas

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    Elsevier BV, 2018

    Published in: Cancer Cell

  10. Kahles, André; Lehmann, Kjong-Van; Toussaint, Nora C.; Hüser, Matthias; Stark, Stefan G.; Sachsenberg, Timo; Stegle, Oliver; Kohlbacher, Oliver; Sander, Chris; Rätsch, Gunnar; Caesar-Johnson, Samantha J.; Demchok, John A.; Felau, Ina; Kasapi, Melpomeni; Ferguson, Martin L.; Hutter, Carolyn M.; Sofia, Heidi J.; Tarnuzzer, Roy; Wang, Zhining; Yang, Liming; Zenklusen, Jean C.; Zhang, Jiashan (Julia); Chudamani, Sudha; Liu, Jia; [...]

    Comprehensive Analysis of Alternative Splicing Across Tumors from 8,705 Patients

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    Elsevier BV, 2018

    Published in: Cancer Cell

  11. Bailey, Matthew H.; Tokheim, Collin; Porta-Pardo, Eduard; Sengupta, Sohini; Bertrand, Denis; Weerasinghe, Amila; Colaprico, Antonio; Wendl, Michael C.; Kim, Jaegil; Reardon, Brendan; Ng, Patrick Kwok-Shing; Jeong, Kang Jin; Cao, Song; Wang, Zixing; Gao, Jianjiong; Gao, Qingsong; Wang, Fang; Liu, Eric Minwei; Mularoni, Loris; Rubio-Perez, Carlota; Nagarajan, Niranjan; Cortés-Ciriano, Isidro; Zhou, Daniel Cui; Liang, Wen-Wei; [...]

    Comprehensive Characterization of Cancer Driver Genes and Mutations

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    Elsevier BV, 2018

    Published in: Cell

  12. Bailey, Matthew H.; Tokheim, Collin; Porta-Pardo, Eduard; Sengupta, Sohini; Bertrand, Denis; Weerasinghe, Amila; Colaprico, Antonio; Wendl, Michael C.; Kim, Jaegil; Reardon, Brendan; Kwok-Shing Ng, Patrick; Jeong, Kang Jin; Cao, Song; Wang, Zixing; Gao, Jianjiong; Gao, Qingsong; Wang, Fang; Liu, Eric Minwei; Mularoni, Loris; Rubio-Perez, Carlota; Nagarajan, Niranjan; Cortés-Ciriano, Isidro; Zhou, Daniel Cui; Liang, Wen-Wei; [...]

    Comprehensive Characterization of Cancer Driver Genes and Mutations

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    Elsevier BV, 2018

    Published in: Cell

  13. Wang, Yumeng; Xu, Xiaoyan; Maglic, Dejan; Dill, Michael T.; Mojumdar, Kamalika; Ng, Patrick Kwok-Shing; Jeong, Kang Jin; Tsang, Yiu Huen; Moreno, Daniela; Bhavana, Venkata Hemanjani; Peng, Xinxin; Ge, Zhongqi; Chen, Hu; Li, Jun; Chen, Zhongyuan; Zhang, Huiwen; Han, Leng; Du, Di; Creighton, Chad J.; Mills, Gordon B.; Camargo, Fernando; Liang, Han; Caesar-Johnson, Samantha J.; Demchok, John A.; [...]

    Comprehensive Molecular Characterization of the Hippo Signaling Pathway in Cancer

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    Elsevier BV, 2018

    Published in: Cell Reports

  14. Berger, Ashton C.; Korkut, Anil; Kanchi, Rupa S.; Hegde, Apurva M.; Lenoir, Walter; Liu, Wenbin; Liu, Yuexin; Fan, Huihui; Shen, Hui; Ravikumar, Visweswaran; Rao, Arvind; Schultz, Andre; Li, Xubin; Sumazin, Pavel; Williams, Cecilia; Mestdagh, Pieter; Gunaratne, Preethi H.; Yau, Christina; Bowlby, Reanne; Robertson, A. Gordon; Tiezzi, Daniel G.; Wang, Chen; Cherniack, Andrew D.; Godwin, Andrew K.; [...]

    A Comprehensive Pan-Cancer Molecular Study of Gynecologic and Breast Cancers

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    Elsevier BV, 2018

    Published in: Cancer Cell

  15. Gao, Qingsong; Liang, Wen-Wei; Foltz, Steven M.; Mutharasu, Gnanavel; Jayasinghe, Reyka G.; Cao, Song; Liao, Wen-Wei; Reynolds, Sheila M.; Wyczalkowski, Matthew A.; Yao, Lijun; Yu, Lihua; Sun, Sam Q.; Chen, Ken; Lazar, Alexander J.; Fields, Ryan C.; Wendl, Michael C.; Van Tine, Brian A.; Vij, Ravi; Chen, Feng; Nykter, Matti; Shmulevich, Ilya; Ding, Li; Caesar-Johnson, Samantha J.; Demchok, John A.; [...]

    Driver Fusions and Their Implications in the Development and Treatment of Human Cancers

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    Elsevier BV, 2018

    Published in: Cell Reports