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Sun, Yu [Author]; Piechotta, Michael [Author]; Naarmann-de Vries, Isabel S. [Author]; Dieterich, Christoph [Author]; Ehrenhofer-Murray, Ann E [Author]

Detection of queuosine and queuosine precursors in tRNAs by direct RNA sequencing

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10 November 2023

Published in: Nucleic acids research ; 51(2023), 20 vom: Nov., Seite 11197-11212
Piechotta, Michael [Author]; Naarmann-de Vries, Isabel S. [Author]; Wang, Qi [Author]; Altmüller, Janine [Author]; Dieterich, Christoph [Author]

RNA modification mapping with JACUSA2

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16 May 2022

Published in: Genome biology ; 23(2022), Artikel-ID 115, Seite 1-11
Naarmann-de Vries, Isabel S. [Author]; Eschenbach, Jessica [Author]; Schudy, Sarah [Author]; Meder, Benjamin [Author]; Dieterich, Christoph [Author]

Targeted analysis of circRNA expression in patient samples by lexo-circSeq

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https://www.frontiersin.org/articles/10.3389/fmolb.2022.875805

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08 June 2022

Published in: Frontiers in molecular biosciences ; 9(2022) vom: Aug., Artikel-ID 875805, Seite 1-10
Boileau, Etienne [Author]; Li, Xue [Author]; Naarmann-de Vries, Isabel S. [Author]; Becker, Christian [Author]; Casper, Ramona [Author]; Altmüller, Janine [Author]; Leuschner, Florian [Author]; Dieterich, Christoph [Author]

Full-length spatial transcriptomics reveals the unexplored isoform diversity of the myocardium post-MI

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https://www.frontiersin.org/articles/10.3389/fgene.2022.912572

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22 July 2022

Published in: Frontiers in genetics ; 13(2022) vom: Juli, Artikel-ID 912572, Seite 1-11
Naarmann-de Vries, Isabel S. [Author]; Zorbas, Christiane [Author]; Lemsara, Amina [Author]; Piechotta, Michael [Author]; Ernst, Felix Georg Maria [Author]; Wacheul, Ludivine [Author]; Lafontaine, Denis L. J. [Author]; Dieterich, Christoph [Author]

Comprehensive identification of diverse ribosomal RNA modifications by targeted nanopore direct RNA sequencing and JACUSA2

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27 Aug 2023

Published in: RNA biology ; 20(2023), 1, Seite 652-665
Naarmann-de Vries, Isabel S. [Author]; Senatore, Roberta [Author]; Moritz, Bodo [Author]; Marx, Gernot [Author]; Urlaub, Henning [Author]; Niessing, Dierk [Author]; Ostareck, Dirk H. [Author]; Ostareck-Lederer, Antje [Author]

Methylated HNRNPK acts on RPS19 to regulate ALOX15 synthesis in erythropoiesis

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https://academic.oup.com/nar/article/49/6/3507/6154465

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28 February 2021

Published in: Nucleic acids research ; 49(2021), 6 vom: 6. Apr., Seite 3507-3523
Gjerga, Enio; Naarmann-de Vries, Isabel S; Dieterich, Christoph

Characterizing alternative splicing effects on protein interaction networks with LINDA

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Oxford University Press (OUP), 2023

Published in: Bioinformatics
Uvarovskii, Alexey; Naarmann-de Vries, Isabel S.; Dieterich, Christoph

On the optimal design of metabolic RNA labeling experiments

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Public Library of Science (PLoS), 2019

Published in: PLOS Computational Biology
Chan, Adrian; Naarmann-de Vries, Isabel S.; Scheitl, Carolin P. M.; Höbartner, Claudia; Dieterich, Christoph

Detecting m6A at single-molecular resolution via direct RNA sequencing and realistic training data

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Springer Science and Business Media LLC, 2024

Published in: Nature Communications
Piechotta, Michael; Naarmann-de Vries, Isabel S.; Wang, Qi; Altmüller, Janine; Dieterich, Christoph

RNA modification mapping with JACUSA2

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Springer Science and Business Media LLC, 2022

Published in: Genome Biology
Naarmann-de Vries, Isabel S.; Eschenbach, Jessica; Schudy, Sarah; Meder, Benjamin; Dieterich, Christoph

Targeted Analysis of circRNA Expression in Patient Samples by Lexo-circSeq

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Frontiers Media SA, 2022

Published in: Frontiers in Molecular Biosciences
Boileau, Etienne; Altmüller, Janine; Naarmann-de Vries, Isabel S; Dieterich, Christoph

A comparison of metabolic labeling and statistical methods to infer genome-wide dynamics of RNA turnover

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Oxford University Press (OUP), 2021

Published in: Briefings in Bioinformatics
Ostareck, Dirk H.; Naarmann‐de Vries, Isabel S.; Ostareck‐Lederer, Antje

DDX6 and its orthologs as modulators of cellular and viral RNA expression

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Wiley, 2014

Published in: WIREs RNA
de Vries, Sebastian; Naarmann-de Vries, Isabel S.; Urlaub, Henning; Lue, Hongqi; Bernhagen, JÜrgen; Ostareck, Dirk H.; Ostareck-Lederer, Antje

Identification of DEAD-box RNA Helicase 6 (DDX6) as a Cellular Modulator of Vascular Endothelial Growth Factor Expression under Hypoxia*

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Elsevier BV, 2013

Published in: Journal of Biological Chemistry
Rabolli, Charles P.; Naarmann-de Vries, Isabel S.; Makarewich, Catherine A.; Baskin, Kedryn K.; Dieterich, Christoph; Accornero, Federica

Nanopore Detection of METTL3-Dependent m6A-Modified mRNA Reveals a New Mechanism Regulating Cardiomyocyte Mitochondrial Metabolism

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Ovid Technologies (Wolters Kluwer Health), 2024

Published in: Circulation
Boileau, Etienne; Li, Xue; Naarmann-de Vries, Isabel S; Becker, Christian; Casper, Ramona; Altmüller, Janine; Leuschner, Florian; Dieterich, Christoph

Full-Length Spatial Transcriptomics Reveals the Unexplored Isoform Diversity of the Myocardium Post-MI

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Frontiers Media SA, 2022

Published in: Frontiers in Genetics
Naarmann-de Vries, Isabel S.; Brendle, Annika; Bähr-Ivacevic, Tomi; Benes, Vladimir; Ostareck, Dirk H.; Ostareck-Lederer, Antje

HnRNP K-mediated translational control links NMHC IIA to erythroid enucleation

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The Company of Biologists, 2016

Published in: Journal of Cell Science
Moritz, Bodo; Lilie, Hauke; Naarmann-de Vries, Isabel S.; Urlaub, Henning; Wahle, Elmar; Ostareck-Lederer, Antje; Ostareck, Dirk H.

Biophysical and biochemical analysis of hnRNP K: arginine methylation, reversible aggregation and combinatorial binding to nucleic acids

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Walter de Gruyter GmbH, 2014

Published in: Biological Chemistry
de Vries, Sebastian; Benes, Vladimir; Naarmann-de Vries, Isabel S.; Rücklé, Cornelia; Zarnack, Katharina; Marx, Gernot; Ostareck, Dirk H.; Ostareck-Lederer, Antje

P23 Acts as Functional RBP in the Macrophage Inflammation Response

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Frontiers Media SA, 2021

Published in: Frontiers in Molecular Biosciences
Naarmann-de Vries, Isabel S.; Zorbas, Christiane; Lemsara, Amina; Piechotta, Michael; Ernst, Felix G. M.; Wacheul, Ludivine; Lafontaine, Denis L. J.; Dieterich, Christoph

Comprehensive identification of diverse ribosomal RNA modifications by targeted nanopore direct RNA sequencing and JACUSA2

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Informa UK Limited, 2023

Published in: RNA Biology

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