Skip to contents Voges, Jan [Author] ; Ostermann, Jörn [Degree supervisor]; Ochoa Alverz, Idoia [Degree supervisor] Gottfried Wilhelm Leibniz Universität Hannover Compression of DNA sequencing data Books View online Schließen > Access ... to E-book (freely accessible) ... to E-book via DOI Close > Bookmarks You can manage bookmarks using lists, please log in to your user account for this. Hannover: Gottfried Wilhelm Leibniz Universität, 2022 Voges, Jan [Author]; Paridaens, Tom [Author]; Müntefering, Fabian [Author]; Mainzer, Liudmila S. [Author]; Bliss, Brian [Author]; Yang, Mingyu [Author]; Ochoa, Idoia [Author]; Fostier, Jan [Author]; Ostermann, Jörn [Author]; Hernaez, Mikel [Author] GABAC : An arithmetic coding solution for genomic data - [published Version] Articles View online Schließen > Links ... to article Close > Bookmarks You can manage bookmarks using lists, please log in to your user account for this. Oxford : Oxford Univ. Press, 2020 Published in: Bioinformatics 36 (2020), Nr. 7 Voges, Jan [Author]; Paridaens, Tom [Author]; Müntefering, Fabian [Author]; Mainzer, Liudmila S. [Author]; Bliss, Brian [Author]; Yang, Mingyu [Author]; Ochoa, Idoia [Author]; Fostier, Jan [Author]; Ostermann, Jörn [Author]; Hernaez, Mikel [Author] GABAC : An arithmetic coding solution for genomic data Books View online Schließen > Access ... to E-book via DOI (freely accessible) ... to E-book via Resolving system (freely accessible) Close > Bookmarks You can manage bookmarks using lists, please log in to your user account for this. Hannover: Gottfried Wilhelm Leibniz Universität Hannover, 2020 ; Hannover: Technische Informationsbibliothek (TIB), 2020 Published in: Bioinformatics ; 36 (2020), Nr. 7, S. 2275-2277 Zhang, Chuanyi; Ochoa, Idoia VEF: a variant filtering tool based on ensemble methods Articles View online Schließen > Access Close > Bookmarks You can manage bookmarks using lists, please log in to your user account for this. Oxford University Press (OUP), 2020 Published in: Bioinformatics, 36 (2020) 8, Seite 2328-2336 Zhang, Chuanyi; El-Kebir, Mohammed; Ochoa, Idoia Moss enables high sensitivity single-nucleotide variant calling from multiple bulk DNA tumor samples Articles View online Schließen > Access Close > Bookmarks You can manage bookmarks using lists, please log in to your user account for this. Springer Science and Business Media LLC, 2021 Published in: Nature Communications, 12 (2021) 1 Hanau, Felix; Röst, Hannes; Ochoa, Idoia mspack: efficient lossless and lossy mass spectrometry data compression Articles View online Schließen > Access Close > Bookmarks You can manage bookmarks using lists, please log in to your user account for this. Oxford University Press (OUP), 2021 Published in: Bioinformatics, 37 (2021) 21, Seite 3923-3925 Meng, Qingxi; Ochoa, Idoia; Hernaez, Mikel GPress: a framework for querying general feature format (GFF) files and expression files in a compressed form Articles View online Schließen > Access Close > Bookmarks You can manage bookmarks using lists, please log in to your user account for this. Oxford University Press (OUP), 2020 Published in: Bioinformatics, 36 (2020) 18, Seite 4810-4812 Yang, Ruochen; Chen, Xi; Ochoa, Idoia MassComp, a lossless compressor for mass spectrometry data Articles View online Schließen > Access Close > Bookmarks You can manage bookmarks using lists, please log in to your user account for this. Springer Science and Business Media LLC, 2019 Published in: BMC Bioinformatics, 20 (2019) 1 Peng, Jianhao; Milenkovic, Olgica; Ochoa, Idoia METHCOMP: a special purpose compression platform for DNA methylation data Articles View online Schließen > Access Close > Bookmarks You can manage bookmarks using lists, please log in to your user account for this. Oxford University Press (OUP), 2018 Published in: Bioinformatics, 34 (2018) 15, Seite 2654-2656 Ochoa, Idoia; Hernaez, Mikel; Weissman, Tsachy iDoComp: a compression scheme for assembled genomes Articles View online Schließen > Access Close > Bookmarks You can manage bookmarks using lists, please log in to your user account for this. Oxford University Press (OUP), 2015 Published in: Bioinformatics, 31 (2015) 5, Seite 626-633 Ochoa, Idoia; Crespo, Pedro M.; Hernaez, Mikel LDPC Codes for Non-Uniform Memoryless Sources and Unequal Energy Allocation Articles View online Schließen > Access Close > Bookmarks You can manage bookmarks using lists, please log in to your user account for this. Institute of Electrical and Electronics Engineers (IEEE), 2010 Published in: IEEE Communications Letters, 14 (2010) 9, Seite 794-796 Weber, Leah L.; Zhang, Chuanyi; Ochoa, Idoia; El-Kebir, Mohammed Phertilizer: Growing a clonal tree from ultra-low coverage single-cell DNA sequencing of tumors Articles View online Schließen > Access Close > Bookmarks You can manage bookmarks using lists, please log in to your user account for this. Public Library of Science (PLoS), 2023 Published in: PLOS Computational Biology, 19 (2023) 10, Seite e1011544 Fischer-Hwang, Irena; Ochoa, Idoia; Weissman, Tsachy; Hernaez, Mikel Denoising of Aligned Genomic Data Articles View online Schließen > Access Close > Bookmarks You can manage bookmarks using lists, please log in to your user account for this. Springer Science and Business Media LLC, 2019 Published in: Scientific Reports, 9 (2019) 1 Hernaez, Mikel; Pavlichin, Dmitri; Weissman, Tsachy; Ochoa, Idoia Genomic Data Compression Articles View online Schließen > Access Close > Bookmarks You can manage bookmarks using lists, please log in to your user account for this. Annual Reviews, 2019 Published in: Annual Review of Biomedical Data Science, 2 (2019) 1, Seite 19-37 Chandak, Shubham; Tatwawadi, Kedar; Ochoa, Idoia; Hernaez, Mikel; Weissman, Tsachy SPRING: a next-generation compressor for FASTQ data Articles View online Schließen > Access Close > Bookmarks You can manage bookmarks using lists, please log in to your user account for this. Oxford University Press (OUP), 2019 Published in: Bioinformatics, 35 (2019) 15, Seite 2674-2676 Roguski, Łukasz; Ochoa, Idoia; Hernaez, Mikel; Deorowicz, Sebastian FaStore: a space-saving solution for raw sequencing data Articles View online Schließen > Access Close > Bookmarks You can manage bookmarks using lists, please log in to your user account for this. Oxford University Press (OUP), 2018 Published in: Bioinformatics, 34 (2018) 16, Seite 2748-2756 Deorowicz, Sebastian; Grabowski, Szymon; Ochoa, Idoia; Hernaez, Mikel; Weissman, Tsachy Comment on: ‘ERGC: an efficient referential genome compression algorithm’ Articles View online Schließen > Access Close > Bookmarks You can manage bookmarks using lists, please log in to your user account for this. Oxford University Press (OUP), 2016 Published in: Bioinformatics, 32 (2016) 7, Seite 1115-1117 Ochoa, Idoia; Hernaez, Mikel; Goldfeder, Rachel; Weissman, Tsachy; Ashley, Euan Effect of lossy compression of quality scores on variant calling Articles View online Schließen > Access Close > Bookmarks You can manage bookmarks using lists, please log in to your user account for this. Oxford University Press (OUP), 2016 Published in: Briefings in Bioinformatics (2016), Seite bbw011 Tatwawadi, Kedar; Hernaez, Mikel; Ochoa, Idoia; Weissman, Tsachy GTRAC: fast retrieval from compressed collections of genomic variants Articles View online Schließen > Access Close > Bookmarks You can manage bookmarks using lists, please log in to your user account for this. Oxford University Press (OUP), 2016 Published in: Bioinformatics, 32 (2016) 17, Seite i479-i486 Ochoa, Idoia; Crespo, Pedro; Ser, Javier Del; Hernaez, Mikel Turbo joint source-channel coding of non-uniform memoryless sources in the bandwidth-limited regime Articles View online Schließen > Access Close > Bookmarks You can manage bookmarks using lists, please log in to your user account for this. Institute of Electrical and Electronics Engineers (IEEE), 2010 Published in: IEEE Communications Letters, 14 (2010) 4, Seite 336-338
Voges, Jan [Author] ; Ostermann, Jörn [Degree supervisor]; Ochoa Alverz, Idoia [Degree supervisor] Gottfried Wilhelm Leibniz Universität Hannover Compression of DNA sequencing data Books View online Schließen > Access ... to E-book (freely accessible) ... to E-book via DOI Close > Bookmarks You can manage bookmarks using lists, please log in to your user account for this. Hannover: Gottfried Wilhelm Leibniz Universität, 2022
Voges, Jan [Author]; Paridaens, Tom [Author]; Müntefering, Fabian [Author]; Mainzer, Liudmila S. [Author]; Bliss, Brian [Author]; Yang, Mingyu [Author]; Ochoa, Idoia [Author]; Fostier, Jan [Author]; Ostermann, Jörn [Author]; Hernaez, Mikel [Author] GABAC : An arithmetic coding solution for genomic data - [published Version] Articles View online Schließen > Links ... to article Close > Bookmarks You can manage bookmarks using lists, please log in to your user account for this. Oxford : Oxford Univ. Press, 2020 Published in: Bioinformatics 36 (2020), Nr. 7
Voges, Jan [Author]; Paridaens, Tom [Author]; Müntefering, Fabian [Author]; Mainzer, Liudmila S. [Author]; Bliss, Brian [Author]; Yang, Mingyu [Author]; Ochoa, Idoia [Author]; Fostier, Jan [Author]; Ostermann, Jörn [Author]; Hernaez, Mikel [Author] GABAC : An arithmetic coding solution for genomic data Books View online Schließen > Access ... to E-book via DOI (freely accessible) ... to E-book via Resolving system (freely accessible) Close > Bookmarks You can manage bookmarks using lists, please log in to your user account for this. Hannover: Gottfried Wilhelm Leibniz Universität Hannover, 2020 ; Hannover: Technische Informationsbibliothek (TIB), 2020 Published in: Bioinformatics ; 36 (2020), Nr. 7, S. 2275-2277
> Access ... to E-book via DOI (freely accessible) ... to E-book via Resolving system (freely accessible)
Zhang, Chuanyi; Ochoa, Idoia VEF: a variant filtering tool based on ensemble methods Articles View online Schließen > Access Close > Bookmarks You can manage bookmarks using lists, please log in to your user account for this. Oxford University Press (OUP), 2020 Published in: Bioinformatics, 36 (2020) 8, Seite 2328-2336
Zhang, Chuanyi; El-Kebir, Mohammed; Ochoa, Idoia Moss enables high sensitivity single-nucleotide variant calling from multiple bulk DNA tumor samples Articles View online Schließen > Access Close > Bookmarks You can manage bookmarks using lists, please log in to your user account for this. Springer Science and Business Media LLC, 2021 Published in: Nature Communications, 12 (2021) 1
Hanau, Felix; Röst, Hannes; Ochoa, Idoia mspack: efficient lossless and lossy mass spectrometry data compression Articles View online Schließen > Access Close > Bookmarks You can manage bookmarks using lists, please log in to your user account for this. Oxford University Press (OUP), 2021 Published in: Bioinformatics, 37 (2021) 21, Seite 3923-3925
Meng, Qingxi; Ochoa, Idoia; Hernaez, Mikel GPress: a framework for querying general feature format (GFF) files and expression files in a compressed form Articles View online Schließen > Access Close > Bookmarks You can manage bookmarks using lists, please log in to your user account for this. Oxford University Press (OUP), 2020 Published in: Bioinformatics, 36 (2020) 18, Seite 4810-4812
Yang, Ruochen; Chen, Xi; Ochoa, Idoia MassComp, a lossless compressor for mass spectrometry data Articles View online Schließen > Access Close > Bookmarks You can manage bookmarks using lists, please log in to your user account for this. Springer Science and Business Media LLC, 2019 Published in: BMC Bioinformatics, 20 (2019) 1
Peng, Jianhao; Milenkovic, Olgica; Ochoa, Idoia METHCOMP: a special purpose compression platform for DNA methylation data Articles View online Schließen > Access Close > Bookmarks You can manage bookmarks using lists, please log in to your user account for this. Oxford University Press (OUP), 2018 Published in: Bioinformatics, 34 (2018) 15, Seite 2654-2656
Ochoa, Idoia; Hernaez, Mikel; Weissman, Tsachy iDoComp: a compression scheme for assembled genomes Articles View online Schließen > Access Close > Bookmarks You can manage bookmarks using lists, please log in to your user account for this. Oxford University Press (OUP), 2015 Published in: Bioinformatics, 31 (2015) 5, Seite 626-633
Ochoa, Idoia; Crespo, Pedro M.; Hernaez, Mikel LDPC Codes for Non-Uniform Memoryless Sources and Unequal Energy Allocation Articles View online Schließen > Access Close > Bookmarks You can manage bookmarks using lists, please log in to your user account for this. Institute of Electrical and Electronics Engineers (IEEE), 2010 Published in: IEEE Communications Letters, 14 (2010) 9, Seite 794-796
Weber, Leah L.; Zhang, Chuanyi; Ochoa, Idoia; El-Kebir, Mohammed Phertilizer: Growing a clonal tree from ultra-low coverage single-cell DNA sequencing of tumors Articles View online Schließen > Access Close > Bookmarks You can manage bookmarks using lists, please log in to your user account for this. Public Library of Science (PLoS), 2023 Published in: PLOS Computational Biology, 19 (2023) 10, Seite e1011544
Fischer-Hwang, Irena; Ochoa, Idoia; Weissman, Tsachy; Hernaez, Mikel Denoising of Aligned Genomic Data Articles View online Schließen > Access Close > Bookmarks You can manage bookmarks using lists, please log in to your user account for this. Springer Science and Business Media LLC, 2019 Published in: Scientific Reports, 9 (2019) 1
Hernaez, Mikel; Pavlichin, Dmitri; Weissman, Tsachy; Ochoa, Idoia Genomic Data Compression Articles View online Schließen > Access Close > Bookmarks You can manage bookmarks using lists, please log in to your user account for this. Annual Reviews, 2019 Published in: Annual Review of Biomedical Data Science, 2 (2019) 1, Seite 19-37
Chandak, Shubham; Tatwawadi, Kedar; Ochoa, Idoia; Hernaez, Mikel; Weissman, Tsachy SPRING: a next-generation compressor for FASTQ data Articles View online Schließen > Access Close > Bookmarks You can manage bookmarks using lists, please log in to your user account for this. Oxford University Press (OUP), 2019 Published in: Bioinformatics, 35 (2019) 15, Seite 2674-2676
Roguski, Łukasz; Ochoa, Idoia; Hernaez, Mikel; Deorowicz, Sebastian FaStore: a space-saving solution for raw sequencing data Articles View online Schließen > Access Close > Bookmarks You can manage bookmarks using lists, please log in to your user account for this. Oxford University Press (OUP), 2018 Published in: Bioinformatics, 34 (2018) 16, Seite 2748-2756
Deorowicz, Sebastian; Grabowski, Szymon; Ochoa, Idoia; Hernaez, Mikel; Weissman, Tsachy Comment on: ‘ERGC: an efficient referential genome compression algorithm’ Articles View online Schließen > Access Close > Bookmarks You can manage bookmarks using lists, please log in to your user account for this. Oxford University Press (OUP), 2016 Published in: Bioinformatics, 32 (2016) 7, Seite 1115-1117
Ochoa, Idoia; Hernaez, Mikel; Goldfeder, Rachel; Weissman, Tsachy; Ashley, Euan Effect of lossy compression of quality scores on variant calling Articles View online Schließen > Access Close > Bookmarks You can manage bookmarks using lists, please log in to your user account for this. Oxford University Press (OUP), 2016 Published in: Briefings in Bioinformatics (2016), Seite bbw011
Tatwawadi, Kedar; Hernaez, Mikel; Ochoa, Idoia; Weissman, Tsachy GTRAC: fast retrieval from compressed collections of genomic variants Articles View online Schließen > Access Close > Bookmarks You can manage bookmarks using lists, please log in to your user account for this. Oxford University Press (OUP), 2016 Published in: Bioinformatics, 32 (2016) 17, Seite i479-i486
Ochoa, Idoia; Crespo, Pedro; Ser, Javier Del; Hernaez, Mikel Turbo joint source-channel coding of non-uniform memoryless sources in the bandwidth-limited regime Articles View online Schließen > Access Close > Bookmarks You can manage bookmarks using lists, please log in to your user account for this. Institute of Electrical and Electronics Engineers (IEEE), 2010 Published in: IEEE Communications Letters, 14 (2010) 4, Seite 336-338
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