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Voytik, Eugenia [Author] ; Mann, Matthias [Degree supervisor]

Visualization and exploration of next-generation proteomics data

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München: Universitätsbibliothek der Ludwig-Maximilians-Universität, 2022
Voytik, Eugenia [Author] ; Mann, Matthias [Degree supervisor]

Visualization and exploration of next-generation proteomics data

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München: Universitätsbibliothek der Ludwig-Maximilians-Universität, 2022
Schessner, Julia Patricia; Voytik, Eugenia; Bludau, Isabell

A practical guide to interpreting and generating bottom‐up proteomics data visualizations

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Wiley, 2022

Published in: PROTEOMICS, 22 (2022) 8
Willems, Sander; Voytik, Eugenia; Skowronek, Patricia; Strauss, Maximilian T.; Mann, Matthias

AlphaTims: Indexing Trapped Ion Mobility Spectrometry–TOF Data for Fast and Easy Accession and Visualization

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Elsevier BV, 2021

Published in: Molecular & Cellular Proteomics, 20 (2021), Seite 100149
Voytik, Eugenia; Bludau, Isabell; Willems, Sander; Hansen, Fynn M; Brunner, Andreas-David; Strauss, Maximilian T; Mann, Matthias

AlphaMap: an open-source Python package for the visual annotation of proteomics data with sequence-specific knowledge

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Oxford University Press (OUP), 2022

Published in: Bioinformatics, 38 (2022) 3, Seite 849-852
Strauss, Maximilian T.; Bludau, Isabell; Zeng, Wen-Feng; Voytik, Eugenia; Ammar, Constantin; Schessner, Julia P.; Ilango, Rajesh; Gill, Michelle; Meier, Florian; Willems, Sander; Mann, Matthias

AlphaPept: a modern and open framework for MS-based proteomics

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Springer Science and Business Media LLC, 2024

Published in: Nature Communications, 15 (2024) 1
Zeng, Wen-Feng; Zhou, Xie-Xuan; Willems, Sander; Ammar, Constantin; Wahle, Maria; Bludau, Isabell; Voytik, Eugenia; Strauss, Maximillian T.; Mann, Matthias

AlphaPeptDeep: a modular deep learning framework to predict peptide properties for proteomics

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Springer Science and Business Media LLC, 2022

Published in: Nature Communications, 13 (2022) 1
Skowronek, Patricia; Thielert, Marvin; Voytik, Eugenia; Tanzer, Maria C.; Hansen, Fynn M.; Willems, Sander; Karayel, Ozge; Brunner, Andreas-David; Meier, Florian; Mann, Matthias

Rapid and In-Depth Coverage of the (Phospho-)Proteome With Deep Libraries and Optimal Window Design for dia-PASEF

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Elsevier BV, 2022

Published in: Molecular & Cellular Proteomics, 21 (2022) 9, Seite 100279
Meier, Florian; Köhler, Niklas D.; Brunner, Andreas-David; Wanka, Jean-Marc H.; Voytik, Eugenia; Strauss, Maximilian T.; Theis, Fabian J.; Mann, Matthias

Deep learning the collisional cross sections of the peptide universe from a million experimental values

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Springer Science and Business Media LLC, 2021

Published in: Nature Communications, 12 (2021) 1
Meier, Florian; Brunner, Andreas-David; Frank, Max; Ha, Annie; Bludau, Isabell; Voytik, Eugenia; Kaspar-Schoenefeld, Stephanie; Lubeck, Markus; Raether, Oliver; Bache, Nicolai; Aebersold, Ruedi; Collins, Ben C.; Röst, Hannes L.; Mann, Matthias

diaPASEF: parallel accumulation–serial fragmentation combined with data-independent acquisition

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Springer Science and Business Media LLC, 2020

Published in: Nature Methods, 17 (2020) 12, Seite 1229-1236
Geyer, Philipp E; Voytik, Eugenia; Treit, Peter V; Doll, Sophia; Kleinhempel, Alisa; Niu, Lili; Müller, Johannes B; Buchholtz, Marie‐Luise; Bader, Jakob M; Teupser, Daniel; Holdt, Lesca M; Mann, Matthias

Plasma Proteome Profiling to detect and avoid sample‐related biases in biomarker studies

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Springer Science and Business Media LLC, 2019

Published in: EMBO Molecular Medicine, 11 (2019) 11

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