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  1. Knijnenburg, Theo A.; Wang, Linghua; Zimmermann, Michael T.; Chambwe, Nyasha; Gao, Galen F.; Cherniack, Andrew D.; Fan, Huihui; Shen, Hui; Way, Gregory P.; Greene, Casey S.; Liu, Yuexin; Akbani, Rehan; Feng, Bin; Donehower, Lawrence A.; Miller, Chase; Shen, Yang; Karimi, Mostafa; Chen, Haoran; Kim, Pora; Jia, Peilin; Shinbrot, Eve; Zhang, Shaojun; Liu, Jianfang; Hu, Hai; [...]

    Genomic and Molecular Landscape of DNA Damage Repair Deficiency across The Cancer Genome Atlas

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    Elsevier BV, 2018

    Published in: Cell Reports, 23 (2018) 1, Seite 239-254.e6

  2. Ding, Li; Bailey, Matthew H.; Porta-Pardo, Eduard; Thorsson, Vesteinn; Colaprico, Antonio; Bertrand, Denis; Gibbs, David L.; Weerasinghe, Amila; Huang, Kuan-lin; Tokheim, Collin; Cortés-Ciriano, Isidro; Jayasinghe, Reyka; Chen, Feng; Yu, Lihua; Sun, Sam; Olsen, Catharina; Kim, Jaegil; Taylor, Alison M.; Cherniack, Andrew D.; Akbani, Rehan; Suphavilai, Chayaporn; Nagarajan, Niranjan; Stuart, Joshua M.; Mills, Gordon B.; [...]

    Perspective on Oncogenic Processes at the End of the Beginning of Cancer Genomics

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    Elsevier BV, 2018

    Published in: Cell, 173 (2018) 2, Seite 305-320.e10

  3. Thorsson, Vésteinn; Gibbs, David L.; Brown, Scott D.; Wolf, Denise; Bortone, Dante S.; Ou Yang, Tai-Hsien; Porta-Pardo, Eduard; Gao, Galen F.; Plaisier, Christopher L.; Eddy, James A.; Ziv, Elad; Culhane, Aedin C.; Paull, Evan O.; Sivakumar, I.K. Ashok; Gentles, Andrew J.; Malhotra, Raunaq; Farshidfar, Farshad; Colaprico, Antonio; Parker, Joel S.; Mose, Lisle E.; Vo, Nam Sy; Liu, Jianfang; Liu, Yuexin; Rader, Janet; [...]

    The Immune Landscape of Cancer

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    Elsevier BV, 2019

    Published in: Immunity, 51 (2019) 2, Seite 411-412

  4. Hoadley, Katherine A.; Yau, Christina; Hinoue, Toshinori; Wolf, Denise M.; Lazar, Alexander J.; Drill, Esther; Shen, Ronglai; Taylor, Alison M.; Cherniack, Andrew D.; Thorsson, Vésteinn; Akbani, Rehan; Bowlby, Reanne; Wong, Christopher K.; Wiznerowicz, Maciej; Sanchez-Vega, Francisco; Robertson, A. Gordon; Schneider, Barbara G.; Lawrence, Michael S.; Noushmehr, Houtan; Malta, Tathiane M.; Stuart, Joshua M.; Benz, Christopher C.; Laird, Peter W.; Caesar-Johnson, Samantha J.; [...]

    Cell-of-Origin Patterns Dominate the Molecular Classification of 10,000 Tumors from 33 Types of Cancer

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    Elsevier BV, 2018

    Published in: Cell, 173 (2018) 2, Seite 291-304.e6

  5. Gao, Qingsong; Liang, Wen-Wei; Foltz, Steven M.; Mutharasu, Gnanavel; Jayasinghe, Reyka G.; Cao, Song; Liao, Wen-Wei; Reynolds, Sheila M.; Wyczalkowski, Matthew A.; Yao, Lijun; Yu, Lihua; Sun, Sam Q.; Chen, Ken; Lazar, Alexander J.; Fields, Ryan C.; Wendl, Michael C.; Van Tine, Brian A.; Vij, Ravi; Chen, Feng; Nykter, Matti; Shmulevich, Ilya; Ding, Li; Caesar-Johnson, Samantha J.; Demchok, John A.; [...]

    Driver Fusions and Their Implications in the Development and Treatment of Human Cancers

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    Elsevier BV, 2018

    Published in: Cell Reports, 23 (2018) 1, Seite 227-238.e3

  6. Campbell, Joshua D.; Yau, Christina; Bowlby, Reanne; Liu, Yuexin; Brennan, Kevin; Fan, Huihui; Taylor, Alison M.; Wang, Chen; Walter, Vonn; Akbani, Rehan; Byers, Lauren Averett; Creighton, Chad J.; Coarfa, Cristian; Shih, Juliann; Cherniack, Andrew D.; Gevaert, Olivier; Prunello, Marcos; Shen, Hui; Anur, Pavana; Chen, Jianhong; Cheng, Hui; Hayes, D. Neil; Bullman, Susan; Pedamallu, Chandra Sekhar; [...]

    Genomic, Pathway Network, and Immunologic Features Distinguishing Squamous Carcinomas

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    Elsevier BV, 2018

    Published in: Cell Reports, 23 (2018) 1, Seite 194-212.e6

  7. Thorsson, Vésteinn; Gibbs, David L.; Brown, Scott D.; Wolf, Denise; Bortone, Dante S.; Ou Yang, Tai-Hsien; Porta-Pardo, Eduard; Gao, Galen F.; Plaisier, Christopher L.; Eddy, James A.; Ziv, Elad; Culhane, Aedin C.; Paull, Evan O.; Sivakumar, I.K. Ashok; Gentles, Andrew J.; Malhotra, Raunaq; Farshidfar, Farshad; Colaprico, Antonio; Parker, Joel S.; Mose, Lisle E.; Vo, Nam Sy; Liu, Jianfang; Liu, Yuexin; Rader, Janet; [...]

    The Immune Landscape of Cancer

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    Elsevier BV, 2018

    Published in: Immunity, 48 (2018) 4, Seite 812-830.e14

  8. Liu, Jianfang; Lichtenberg, Tara; Hoadley, Katherine A.; Poisson, Laila M.; Lazar, Alexander J.; Cherniack, Andrew D.; Kovatich, Albert J.; Benz, Christopher C.; Levine, Douglas A.; Lee, Adrian V.; Omberg, Larsson; Wolf, Denise M.; Shriver, Craig D.; Thorsson, Vesteinn; Hu, Hai; Caesar-Johnson, Samantha J.; Demchok, John A.; Felau, Ina; Kasapi, Melpomeni; Ferguson, Martin L.; Hutter, Carolyn M.; Sofia, Heidi J.; Tarnuzzer, Roy; Wang, Zhining; [...]

    An Integrated TCGA Pan-Cancer Clinical Data Resource to Drive High-Quality Survival Outcome Analytics

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    Elsevier BV, 2018

    Published in: Cell, 173 (2018) 2, Seite 400-416.e11

  9. Korkut, Anil; Zaidi, Sobia; Kanchi, Rupa S.; Rao, Shuyun; Gough, Nancy R.; Schultz, Andre; Li, Xubin; Lorenzi, Philip L.; Berger, Ashton C.; Robertson, Gordon; Kwong, Lawrence N.; Datto, Mike; Roszik, Jason; Ling, Shiyun; Ravikumar, Visweswaran; Manyam, Ganiraju; Rao, Arvind; Shelley, Simon; Liu, Yuexin; Ju, Zhenlin; Hansel, Donna; de Velasco, Guillermo; Pennathur, Arjun; Andersen, Jesper B.; [...]

    A Pan-Cancer Analysis Reveals High-Frequency Genetic Alterations in Mediators of Signaling by the TGF-β Superfamily

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    Elsevier BV, 2018

    Published in: Cell Systems, 7 (2018) 4, Seite 422-437.e7

  10. Liu, Yang; Sethi, Nilay S.; Hinoue, Toshinori; Schneider, Barbara G.; Cherniack, Andrew D.; Sanchez-Vega, Francisco; Seoane, Jose A.; Farshidfar, Farshad; Bowlby, Reanne; Islam, Mirazul; Kim, Jaegil; Chatila, Walid; Akbani, Rehan; Kanchi, Rupa S.; Rabkin, Charles S.; Willis, Joseph E.; Wang, Kenneth K.; McCall, Shannon J.; Mishra, Lopa; Ojesina, Akinyemi I.; Bullman, Susan; Pedamallu, Chandra Sekhar; Lazar, Alexander J.; Sakai, Ryo; [...]

    Comparative Molecular Analysis of Gastrointestinal Adenocarcinomas

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    Elsevier BV, 2018

    Published in: Cancer Cell, 33 (2018) 4, Seite 721-735.e8

  11. Malta, Tathiane M.; Sokolov, Artem; Gentles, Andrew J.; Burzykowski, Tomasz; Poisson, Laila; Weinstein, John N.; Kamińska, Bożena; Huelsken, Joerg; Omberg, Larsson; Gevaert, Olivier; Colaprico, Antonio; Czerwińska, Patrycja; Mazurek, Sylwia; Mishra, Lopa; Heyn, Holger; Krasnitz, Alex; Godwin, Andrew K.; Lazar, Alexander J.; Stuart, Joshua M.; Hoadley, Katherine A.; Laird, Peter W.; Noushmehr, Houtan; Wiznerowicz, Maciej; Caesar-Johnson, Samantha J.; [...]

    Machine Learning Identifies Stemness Features Associated with Oncogenic Dedifferentiation

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    Elsevier BV, 2018

    Published in: Cell, 173 (2018) 2, Seite 338-354.e15

  12. Seiler, Michael; Peng, Shouyong; Agrawal, Anant A.; Palacino, James; Teng, Teng; Zhu, Ping; Smith, Peter G.; Buonamici, Silvia; Yu, Lihua; Caesar-Johnson, Samantha J.; Demchok, John A.; Felau, Ina; Kasapi, Melpomeni; Ferguson, Martin L.; Hutter, Carolyn M.; Sofia, Heidi J.; Tarnuzzer, Roy; Wang, Zhining; Yang, Liming; Zenklusen, Jean C.; Zhang, Jiashan (Julia); Chudamani, Sudha; Liu, Jia; Lolla, Laxmi; [...]

    Somatic Mutational Landscape of Splicing Factor Genes and Their Functional Consequences across 33 Cancer Types

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    Elsevier BV, 2018

    Published in: Cell Reports, 23 (2018) 1, Seite 282-296.e4

  13. Jayasinghe, Reyka G.; Cao, Song; Gao, Qingsong; Wendl, Michael C.; Vo, Nam Sy; Reynolds, Sheila M.; Zhao, Yanyan; Climente-González, Héctor; Chai, Shengjie; Wang, Fang; Varghese, Rajees; Huang, Mo; Liang, Wen-Wei; Wyczalkowski, Matthew A.; Sengupta, Sohini; Li, Zhi; Payne, Samuel H.; Fenyö, David; Miner, Jeffrey H.; Walter, Matthew J.; Vincent, Benjamin; Eyras, Eduardo; Chen, Ken; Shmulevich, Ilya; [...]

    Systematic Analysis of Splice-Site-Creating Mutations in Cancer

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    Elsevier BV, 2018

    Published in: Cell Reports, 23 (2018) 1, Seite 270-281.e3

  14. Kahles, André; Lehmann, Kjong-Van; Toussaint, Nora C.; Hüser, Matthias; Stark, Stefan G.; Sachsenberg, Timo; Stegle, Oliver; Kohlbacher, Oliver; Sander, Chris; Rätsch, Gunnar; Caesar-Johnson, Samantha J.; Demchok, John A.; Felau, Ina; Kasapi, Melpomeni; Ferguson, Martin L.; Hutter, Carolyn M.; Sofia, Heidi J.; Tarnuzzer, Roy; Wang, Zhining; Yang, Liming; Zenklusen, Jean C.; Zhang, Jiashan (Julia); Chudamani, Sudha; Liu, Jia; [...]

    Comprehensive Analysis of Alternative Splicing Across Tumors from 8,705 Patients

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    Elsevier BV, 2018

    Published in: Cancer Cell, 34 (2018) 2, Seite 211-224.e6

  15. Bailey, Matthew H.; Tokheim, Collin; Porta-Pardo, Eduard; Sengupta, Sohini; Bertrand, Denis; Weerasinghe, Amila; Colaprico, Antonio; Wendl, Michael C.; Kim, Jaegil; Reardon, Brendan; Ng, Patrick Kwok-Shing; Jeong, Kang Jin; Cao, Song; Wang, Zixing; Gao, Jianjiong; Gao, Qingsong; Wang, Fang; Liu, Eric Minwei; Mularoni, Loris; Rubio-Perez, Carlota; Nagarajan, Niranjan; Cortés-Ciriano, Isidro; Zhou, Daniel Cui; Liang, Wen-Wei; [...]

    Comprehensive Characterization of Cancer Driver Genes and Mutations

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    Elsevier BV, 2018

    Published in: Cell, 173 (2018) 2, Seite 371-385.e18

  16. Bailey, Matthew H.; Tokheim, Collin; Porta-Pardo, Eduard; Sengupta, Sohini; Bertrand, Denis; Weerasinghe, Amila; Colaprico, Antonio; Wendl, Michael C.; Kim, Jaegil; Reardon, Brendan; Kwok-Shing Ng, Patrick; Jeong, Kang Jin; Cao, Song; Wang, Zixing; Gao, Jianjiong; Gao, Qingsong; Wang, Fang; Liu, Eric Minwei; Mularoni, Loris; Rubio-Perez, Carlota; Nagarajan, Niranjan; Cortés-Ciriano, Isidro; Zhou, Daniel Cui; Liang, Wen-Wei; [...]

    Comprehensive Characterization of Cancer Driver Genes and Mutations

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    Elsevier BV, 2018

    Published in: Cell, 174 (2018) 4, Seite 1034-1035

  17. Wang, Yumeng; Xu, Xiaoyan; Maglic, Dejan; Dill, Michael T.; Mojumdar, Kamalika; Ng, Patrick Kwok-Shing; Jeong, Kang Jin; Tsang, Yiu Huen; Moreno, Daniela; Bhavana, Venkata Hemanjani; Peng, Xinxin; Ge, Zhongqi; Chen, Hu; Li, Jun; Chen, Zhongyuan; Zhang, Huiwen; Han, Leng; Du, Di; Creighton, Chad J.; Mills, Gordon B.; Camargo, Fernando; Liang, Han; Caesar-Johnson, Samantha J.; Demchok, John A.; [...]

    Comprehensive Molecular Characterization of the Hippo Signaling Pathway in Cancer

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    Elsevier BV, 2018

    Published in: Cell Reports, 25 (2018) 5, Seite 1304-1317.e5

  18. Taylor, Alison M.; Shih, Juliann; Ha, Gavin; Gao, Galen F.; Zhang, Xiaoyang; Berger, Ashton C.; Schumacher, Steven E.; Wang, Chen; Hu, Hai; Liu, Jianfang; Lazar, Alexander J.; Cherniack, Andrew D.; Beroukhim, Rameen; Meyerson, Matthew; Caesar-Johnson, Samantha J.; Demchok, John A.; Felau, Ina; Kasapi, Melpomeni; Ferguson, Martin L.; Hutter, Carolyn M.; Sofia, Heidi J.; Tarnuzzer, Roy; Wang, Zhining; Yang, Liming; [...]

    Genomic and Functional Approaches to Understanding Cancer Aneuploidy

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    Elsevier BV, 2018

    Published in: Cancer Cell, 33 (2018) 4, Seite 676-689.e3

  19. Ge, Zhongqi; Leighton, Jake S.; Wang, Yumeng; Peng, Xinxin; Chen, Zhongyuan; Chen, Hu; Sun, Yutong; Yao, Fan; Li, Jun; Zhang, Huiwen; Liu, Jianfang; Shriver, Craig D.; Hu, Hai; Piwnica-Worms, Helen; Ma, Li; Liang, Han; Caesar-Johnson, Samantha J.; Demchok, John A.; Felau, Ina; Kasapi, Melpomeni; Ferguson, Martin L.; Hutter, Carolyn M.; Sofia, Heidi J.; Tarnuzzer, Roy; [...]

    Integrated Genomic Analysis of the Ubiquitin Pathway across Cancer Types

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    Elsevier BV, 2018

    Published in: Cell Reports, 23 (2018) 1, Seite 213-226.e3

  20. Wang, Zehua; Yang, Bo; Zhang, Min; Guo, Weiwei; Wu, Zhiyuan; Wang, Yue; Jia, Lin; Li, Song; Xie, Wen; Yang, Da; Caesar-Johnson, Samantha J.; Demchok, John A.; Felau, Ina; Kasapi, Melpomeni; Ferguson, Martin L.; Hutter, Carolyn M.; Sofia, Heidi J.; Tarnuzzer, Roy; Wang, Zhining; Yang, Liming; Zenklusen, Jean C.; Zhang, Jiashan (Julia); Chudamani, Sudha; Liu, Jia; [...]

    lncRNA Epigenetic Landscape Analysis Identifies EPIC1 as an Oncogenic lncRNA that Interacts with MYC and Promotes Cell-Cycle Progression in Cancer

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    Elsevier BV, 2018

    Published in: Cancer Cell, 33 (2018) 4, Seite 706-720.e9