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  1. Dugourd, Aurélien [Author] ; Sáez Rodríguez, Julio [Degree supervisor]

    Bridging the gap between signalling and metabolism through functional and mechanistic analysis of multi-omic data

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    Heidelberg, 06 Apr. 2022

  2. Fuchs, Stijn [Author]; Stalmann, Ursula S. A. [Author]; Snoeren, Inge A. M. [Author]; Bindels, Eric [Author]; Schmitz, Stephani [Author]; Banjanin, Bella [Author]; Hoogenboezem, Remco M. [Author]; van Herk, Stanley [Author]; Saad, Mohamed [Author]; Walter, Wencke [Author]; Haferlach, Torsten [Author]; Seillier, Lancelot [Author]; Sáez Rodríguez, Julio [Author]; Dugourd, Aurélien [Author]; Lehmann, Kjong-Van [Author]; Ben-Neriah, Yinon [Author]; Gleitz, Hélène F. E. [Author]; Schneider, Rebekka K. [Author]

    Collaborative effect of Csnk1a1 haploinsufficiency and mutant p53 in Myc induction can promote leukemic transformation

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    February 13 2024

    Published in: Blood advances ; 8(2024), 3, Seite 766-779

  3. Niarakis, Anna [Author]; Ostaszewski, Marek [Author]; Mazein, Alexander [Author]; Kuperstein, Inna [Author]; Kutmon, Martina [Author]; Gillespie, Marc E. [Author]; Funahashi, Akira [Author]; Acencio, Marcio Luis [Author]; Hemedan, Ahmed [Author]; Aichem, Michael [Author]; Klein, Karsten [Author]; Czauderna, Tobias [Author]; Burtscher, Felicia [Author]; Yamada, Takahiro G. [Author]; Hiki, Yusuke [Author]; Hiroi, Noriko F. [Author]; Hu, Finterly [Author]; Pham, Nhung [Author]; Ehrhart, Friederike [Author]; Willighagen, Egon L. [Author]; Valdeolivas, Alberto [Author]; Dugourd, Aurélien [Author]; Messina, Francesco [Author]; Esteban-Medina, Marina [Author]; [...]

    Drug-target identification in COVID-19 disease mechanisms using computational systems biology approaches

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    13 February 2024

    Published in: Frontiers in immunology ; 14(2024), Artikel-ID 1282859, Seite 1-24

  4. Dugourd, Aurélien [Author]; Gjerga, Enio [Author]; Gabor, Attila [Author]; Sáez Rodríguez, Julio [Author]; Kuppe, Christoph [Author]; Sciacovelli, Marco [Author]; Emdal, Kristina B. [Author]; Vieira, Vitor [Author]; Bekker-Jensen, Dorte B. [Author]; Kranz, Jennifer [Author]; Bindels, Eric M. J. [Author]; Costa, Ana S. H. [Author]; Sousa, Abel [Author]; Beltrao, Pedro [Author]; Rocha, Miguel [Author]; Olsen, Jesper V. [Author]; Frezza, Christian [Author]; Kramann, Rafael [Author]

    Causal integration of multi-omics data with prior knowledge to generate mechanistic hypotheses

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    27 January 2021

    Published in: Molecular systems biology ; 17(2021), 1, Artikel-ID e9730, Seite 1-17

  5. Dimitrov, Daniel [Author]; Türei, Dénes [Author]; Garrido-Rodriguez, Martin [Author]; Burmedi, Paul L. [Author]; Nagai, James S. [Author]; Boys, Charlotte [Author]; Ramirez Flores, Ricardo O. [Author]; Kim, Hyojin [Author]; Szalai, Bence [Author]; Costa, Ivan G. [Author]; Valdeolivas, Alberto [Author]; Dugourd, Aurélien [Author]; Sáez Rodríguez, Julio [Author]

    Comparison of methods and resources for cell-cell communication inference from single-cell RNA-Seq data

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    09 June 2022

    Published in: Nature Communications ; 13(2022), Artikel-ID 3224, Seite 1-13

  6. Gegner, Hagen M. [Author]; Naake, Thomas [Author]; Dugourd, Aurélien [Author]; Müller, Torsten [Author]; Czernilofsky, Felix [Author]; Kliewer, Georg [Author]; Jäger, Evelyn [Author]; Helm, Barbara [Author]; Kunze-Rohrbach, Nina [Author]; Klingmüller, Ursula [Author]; Hopf, Carsten [Author]; Müller-Tidow, Carsten [Author]; Dietrich, Sascha [Author]; Sáez Rodríguez, Julio [Author]; Huber, Wolfgang [Author]; Hell, Rüdiger [Author]; Poschet, Gernot [Author]; Krijgsveld, Jeroen [Author]

    Pre-analytical processing of plasma and serum samples for combined proteome and metabolome analysis

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    20 December 2022

    Published in: Frontiers in molecular biosciences ; 9(2022), Artikel-ID 961448, Seite 1-13

  9. Stoll, Gautier; Caron, Barthélémy; Viara, Eric; Dugourd, Aurélien; Zinovyev, Andrei; Naldi, Aurélien; Kroemer, Guido; Barillot, Emmanuel; Calzone, Laurence

    MaBoSS 2.0: an environment for stochastic Boolean modeling

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    Oxford University Press (OUP), 2017

    Published in: Bioinformatics, 33 (2017) 14, Seite 2226-2228

  15. Gjerga, Enio; Trairatphisan, Panuwat; Gabor, Attila; Koch, Hermann; Chevalier, Celine; Ceccarelli, Franceco; Dugourd, Aurelien; Mitsos, Alexander; Saez-Rodriguez, Julio

    Converting networks to predictive logic models from perturbation signalling data with CellNOpt

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    Oxford University Press (OUP), 2020

    Published in: Bioinformatics, 36 (2020) 16, Seite 4523-4524

  16. Salovska, Barbora; Gao, Erli; Müller‐Dott, Sophia; Li, Wenxue; Cordon, Carlos Chacon; Wang, Shisheng; Dugourd, Aurelien; Rosenberger, George; Saez‐Rodriguez, Julio; Liu, Yansheng

    Phosphoproteomic analysis of metformin signaling in colorectal cancer cells elucidates mechanism of action and potential therapeutic opportunities

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    Wiley, 2023

    Published in: Clinical and Translational Medicine, 13 (2023) 2

  18. Petkevicius, Kasparas; Bidault, Guillaume; Virtue, Sam; Jenkins, Benjamin; Dierendonck, Xanthe A. M. H.; Dugourd, Aurelien; Saez‐Rodriguez, Julio; Stienstra, Rinke; Koulman, Albert; Vidal‐Puig, Antonio

    Norepinephrine promotes triglyceride storage in macrophages via beta2‐adrenergic receptor activation

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    Wiley, 2021

    Published in: The FASEB Journal, 35 (2021) 2

  20. Gaude, Edoardo; Schmidt, Christina; Gammage, Payam A.; Dugourd, Aurelien; Blacker, Thomas; Chew, Sew Peak; Saez-Rodriguez, Julio; O’Neill, John S.; Szabadkai, Gyorgy; Minczuk, Michal; Frezza, Christian

    NADH Shuttling Couples Cytosolic Reductive Carboxylation of Glutamine with Glycolysis in Cells with Mitochondrial Dysfunction

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    Elsevier BV, 2018

    Published in: Molecular Cell, 69 (2018) 4, Seite 581-593.e7