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Segaran, Toby [Editor]; Hammerbacher, Jeff [Other]

Beautiful data : [the stories behind elegant data solutions] - [1. ed.]

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Beijing; Köln [u.a.]: O'Reilly, 2009
Segaran, Toby [Contributor]; Hammerbacher, Jeff [Contributor]

Beautiful data

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Sebastopol, Calif. ;: O'Reilly, 2009
Czech, Eric; Aksoy, Bulent Arman; Aksoy, Pinar; Hammerbacher, Jeff

Cytokit: a single-cell analysis toolkit for high dimensional fluorescent microscopy imaging

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Springer Science and Business Media LLC, 2019

Published in: BMC Bioinformatics, 20 (2019) 1
O'Donnell, Timothy J.; Rubinsteyn, Alex; Bonsack, Maria; Riemer, Angelika B.; Laserson, Uri; Hammerbacher, Jeff

MHCflurry: Open-Source Class I MHC Binding Affinity Prediction

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Elsevier BV, 2018

Published in: Cell Systems, 7 (2018) 1, Seite 129-132.e4
Vanderkam, Dan; Aksoy, B. Arman; Hodes, Isaac; Perrone, Jaclyn; Hammerbacher, Jeff

pileup.js: a JavaScript library for interactive and in-browser visualization of genomic data

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Oxford University Press (OUP), 2016

Published in: Bioinformatics, 32 (2016) 15, Seite 2378-2379
Yellen, Benjamin B.; Zawistowski, Jon S.; Czech, Eric A.; Sanford, Caleb I.; SoRelle, Elliott D.; Luftig, Micah A.; Forbes, Zachary G.; Wood, Kris C.; Hammerbacher, Jeff

Massively parallel quantification of phenotypic heterogeneity in single-cell drug responses

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American Association for the Advancement of Science (AAAS), 2021

Published in: Science Advances, 7 (2021) 38
Brilleman, Samuel L; Crowther, Michael J; Moreno-Betancur, Margarita; Buros Novik, Jacqueline; Dunyak, James; Al-Huniti, Nidal; Fox, Robert; Hammerbacher, Jeff; Wolfe, Rory

Joint longitudinal and time-to-event models for multilevel hierarchical data

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SAGE Publications, 2019

Published in: Statistical Methods in Medical Research, 28 (2019) 12, Seite 3502-3515
O’Donnell, Timothy; Christie, Elizabeth L.; Ahuja, Arun; Buros, Jacqueline; Aksoy, B. Arman; Bowtell, David D. L.; Snyder, Alexandra; Hammerbacher, Jeff

Chemotherapy weakly contributes to predicted neoantigen expression in ovarian cancer

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Springer Science and Business Media LLC, 2018

Published in: BMC Cancer, 18 (2018) 1
Metz, Kathleen S.; Deoudes, Erika M.; Berginski, Matthew E.; Jimenez-Ruiz, Ivan; Aksoy, Bulent Arman; Hammerbacher, Jeff; Gomez, Shawn M.; Phanstiel, Douglas H.

Coral: Clear and Customizable Visualization of Human Kinome Data

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Elsevier BV, 2018

Published in: Cell Systems, 7 (2018) 3, Seite 347-350.e1
Olcina, Monica M.; Balanis, Nikolas G.; Kim, Ryan K.; Aksoy, B. Arman; Kodysh, Julia; Thompson, Michael J.; Hammerbacher, Jeff; Graeber, Thomas G.; Giaccia, Amato J.

Mutations in an Innate Immunity Pathway Are Associated with Poor Overall Survival Outcomes and Hypoxic Signaling in Cancer

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Elsevier BV, 2018

Published in: Cell Reports, 25 (2018) 13, Seite 3721-3732.e6
Nathanson, Tavi; Ahuja, Arun; Rubinsteyn, Alexander; Aksoy, Bulent Arman; Hellmann, Matthew D.; Miao, Diana; Van Allen, Eliezer; Merghoub, Taha; Wolchok, Jedd D.; Snyder, Alexandra; Hammerbacher, Jeff

Somatic Mutations and Neoepitope Homology in Melanomas Treated with CTLA-4 Blockade

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American Association for Cancer Research (AACR), 2017

Published in: Cancer Immunology Research, 5 (2017) 1, Seite 84-91
Perumal, Deepak; Lagana', Alessandro; Rubinsteyn, Alex; Finnigan, John P; Kuo, Pei-Yu; Leshchenko, Violetta V; Chari, Ajai; Cho, Hearn Jay; Jagannath, Sundar; Dudley, Joel; Hammerbacher, Jeff; Schadt, Eric; Bhardwaj, Nina; Parekh, Samir

Patient-Specific Mutation-Derived Tumor Antigens As Targets for Cancer Immunotherapy in Multiple Myeloma

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American Society of Hematology, 2015

Published in: Blood, 126 (2015) 23, Seite 1851-1851
Harjanto, Dewi; Abelin, Jennifer G.; Malloy, Matthew; Suri, Prerna; Colson, Tyler; Goulding, Scott P.; Creech, Amanda L.; Serrano, Lia R.; Nasir, Gibbs; Nasrullah, Yusuf; McGann, Christopher D.; Velez, Diana; Ting, Ying S.; Poran, Asaf; Rothenberg, Daniel A.; Chhangawala, Sagar; Rubinsteyn, Alex; Hammerbacher, Jeff; Gaynor, Richard B.; Fritsch, Edward F.; Oslund, Rob C.; Barthelme, Dominik; Addona, Terri A.; Arieta, Christina M.;

Abstract B23: Enhanced HLA-II epitope prediction for immunotherapy with novel proteomics and genomics approaches

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American Association for Cancer Research (AACR), 2020

Published in: Cancer Immunology Research, 8 (2020) 3_Supplement, Seite B23-B23
Sanseviero, Emilio; O’Brien, Erin M.; Karras, Jenna R.; Shabaneh, Tamer B.; Aksoy, Bulent Arman; Xu, Wei; Zheng, Cathy; Yin, Xiangfan; Xu, Xiaowei; Karakousis, Giorgos C.; Amaravadi, Ravi K.; Nam, Brian; Turk, Mary Jo; Hammerbacher, Jeff; Rubinstein, Mark P.; Schuchter, Lynn M.; Mitchell, Tara C.; Liu, Qin; Stone, Erica L.

Anti–CTLA-4 Activates Intratumoral NK Cells and Combined with IL15/IL15Rα Complexes Enhances Tumor Control

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American Association for Cancer Research (AACR), 2019

Published in: Cancer Immunology Research, 7 (2019) 8, Seite 1371-1380
Snyder, Alexandra; Nathanson, Tavi; Funt, Samuel A.; Ahuja, Arun; Buros Novik, Jacqueline; Hellmann, Matthew D.; Chang, Eliza; Aksoy, Bulent Arman; Al-Ahmadie, Hikmat; Yusko, Erik; Vignali, Marissa; Benzeno, Sharon; Boyd, Mariel; Moran, Meredith; Iyer, Gopa; Robins, Harlan S.; Mardis, Elaine R.; Merghoub, Taha; Hammerbacher, Jeff; Rosenberg, Jonathan E.; Bajorin, Dean F.

Contribution of systemic and somatic factors to clinical response and resistance to PD-L1 blockade in urothelial cancer: An exploratory multi-omic analysis

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Public Library of Science (PLoS), 2017

Published in: PLOS Medicine, 14 (2017) 5, Seite e1002309
Abelin, Jennifer G.; Harjanto, Dewi; Malloy, Matthew; Suri, Prerna; Colson, Tyler; Goulding, Scott P.; Creech, Amanda L.; Serrano, Lia R.; Nasir, Gibran; Nasrullah, Yusuf; McGann, Christopher D.; Velez, Diana; Ting, Ying S.; Poran, Asaf; Rothenberg, Daniel A.; Chhangawala, Sagar; Rubinsteyn, Alex; Hammerbacher, Jeff; Gaynor, Richard B.; Fritsch, Edward F.; Greshock, Joel; Oslund, Rob C.; Barthelme, Dominik; Addona, Terri A.; [...]

Defining HLA-II ligand processing and binding rules with mass spectrometry enhances cancer epitope prediction

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Elsevier BV, 2021

Published in: Immunity, 54 (2021) 2, Seite 388
Abelin, Jennifer G.; Harjanto, Dewi; Malloy, Matthew; Suri, Prerna; Colson, Tyler; Goulding, Scott P.; Creech, Amanda L.; Serrano, Lia R.; Nasir, Gibran; Nasrullah, Yusuf; McGann, Christopher D.; Velez, Diana; Ting, Ying S.; Poran, Asaf; Rothenberg, Daniel A.; Chhangawala, Sagar; Rubinsteyn, Alex; Hammerbacher, Jeff; Gaynor, Richard B.; Fritsch, Edward F.; Greshock, Joel; Oslund, Rob C.; Barthelme, Dominik; Addona, Terri A.; [...]

Defining HLA-II Ligand Processing and Binding Rules with Mass Spectrometry Enhances Cancer Epitope Prediction

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Elsevier BV, 2019

Published in: Immunity, 51 (2019) 4, Seite 766-779.e17
Hellmann, Matthew D.; Nathanson, Tavi; Rizvi, Hira; Creelan, Benjamin C.; Sanchez-Vega, Francisco; Ahuja, Arun; Ni, Ai; Novik, Jacki B.; Mangarin, Levi M.B.; Abu-Akeel, Mohsen; Liu, Cailian; Sauter, Jennifer L.; Rekhtman, Natasha; Chang, Eliza; Callahan, Margaret K.; Chaft, Jamie E.; Voss, Martin H.; Tenet, Megan; Li, Xue-Mei; Covello, Kelly; Renninger, Andrea; Vitazka, Patrik; Geese, William J.; Borghaei, Hossein; [...]

Genomic Features of Response to Combination Immunotherapy in Patients with Advanced Non-Small-Cell Lung Cancer

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Elsevier BV, 2018

Published in: Cancer Cell, 33 (2018) 5, Seite 843-852.e4

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