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  1. Regan, James; Flynn, James P; Rosenthal, Alexandra; Jordan, Hannah; Li, Yijia; Chishti, Rida; Giguel, Francoise; Corry, Heather; Coxen, Kendyll; Fajnzylber, Jesse; Gillespie, Elizabeth; Kuritzkes, Daniel R; Hacohen, Nir; Goldberg, Marcia B; Filbin, Michael R; Yu, Xu G; Baden, Lindsey; Ribeiro, Ruy M; Perelson, Alan S; Conway, Jessica M; Li, Jonathan Z; Abayneh, Betelihem A; Allen, Patrick; Alter, Galit; [...]

    Viral Load Kinetics of Severe Acute Respiratory Syndrome Coronavirus 2 in Hospitalized Individuals With Coronavirus Disease 2019

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    Oxford University Press (OUP), 2021

    Published in: Open Forum Infectious Diseases, 8 (2021) 8

  2. Fajnzylber, Jesse; Regan, James; Coxen, Kendyll; Corry, Heather; Wong, Colline; Rosenthal, Alexandra; Worrall, Daniel; Giguel, Francoise; Piechocka-Trocha, Alicja; Atyeo, Caroline; Fischinger, Stephanie; Chan, Andrew; Flaherty, Keith T.; Hall, Kathryn; Dougan, Michael; Ryan, Edward T.; Gillespie, Elizabeth; Chishti, Rida; Li, Yijia; Jilg, Nikolaus; Hanidziar, Dusan; Baron, Rebecca M.; Baden, Lindsey; Tsibris, Athe M.; [...]

    SARS-CoV-2 viral load is associated with increased disease severity and mortality

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    Springer Science and Business Media LLC, 2020

    Published in: Nature Communications, 11 (2020) 1

  3. Shrock, Ellen; Fujimura, Eric; Kula, Tomasz; Timms, Richard T.; Lee, I-Hsiu; Leng, Yumei; Robinson, Matthew L.; Sie, Brandon M.; Li, Mamie Z.; Chen, Yuezhou; Logue, Jennifer; Zuiani, Adam; McCulloch, Denise; Lelis, Felipe J. N.; Henson, Stephanie; Monaco, Daniel R.; Travers, Meghan; Habibi, Shaghayegh; Clarke, William A.; Caturegli, Patrizio; Laeyendecker, Oliver; Piechocka-Trocha, Alicja; Li, Jonathan Z.; Khatri, Ashok; [...]

    Viral epitope profiling of COVID-19 patients reveals cross-reactivity and correlates of severity

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    American Association for the Advancement of Science (AAAS), 2020

    Published in: Science, 370 (2020) 6520

  4. Vink, Elen; Davis, Chris; MacLean, Alasdair; Pascall, David; McDonald, Sarah E; Gunson, Rory; Hardwick, Hayley E; Oosthuyzen, Wilna; Openshaw, Peter J M; Baillie, J Kenneth; Semple, Malcolm G; Ho, Antonia; Baillie, J Kenneth; Openshaw, Peter J M; Semple, Malcolm G; Barclay, Wendy S; Bogaert, Debby; Chand, Meera; Chechi, Kanta; Cooke, Graham S; Filipe, Ana da Silva; Silva, Thushan de; Docherty, Annemarie B; Correia, Gonçalo dos Santos; [...]

    Viral Coinfections in Hospitalized Coronavirus Disease 2019 Patients Recruited to the International Severe Acute Respiratory and Emerging Infections Consortium WHO Clinical Characterisation Protocol UK Study

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    Oxford University Press (OUP), 2022

    Published in: Open Forum Infectious Diseases, 9 (2022) 11

  5. Sidhu, Jasmin K; Siggins, Matthew K; Liew, Felicity; Russell, Clark D; Uruchurtu, Ashley S S; Davis, Christopher; Turtle, Lance; Moore, Shona C; Hardwick, Hayley E; Oosthuyzen, Wilna; Thomson, Emma C; Semple, Malcolm G; Baillie, J Kenneth; Openshaw, Peter J M; Thwaites, Ryan S; Baillie, J Kenneth; Openshaw, Peter J M; Semple, Malcolm G; Alex, Beatrice; Andrikopoulos, Petros; Bach, Benjamin; Barclay, Wendy S; Bogaert, Debby; Chand, Meera; [...]

    Delayed Mucosal Antiviral Responses Despite Robust Peripheral Inflammation in Fatal COVID-19

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    Oxford University Press (OUP), 2024

    Published in: The Journal of Infectious Diseases, 230 (2024) 1, Seite e17-e29

  6. Goldswain, Hannah; Dong, Xiaofeng; Penrice-Randal, Rebekah; Alruwaili, Muhannad; Shawli, Ghada T.; Prince, Tessa; Williamson, Maia Kavanagh; Raghwani, Jayna; Randle, Nadine; Jones, Benjamin; Donovan-Banfield, I’ah; Salguero, Francisco J.; Tree, Julia A.; Hall, Yper; Hartley, Catherine; Erdmann, Maximilian; Bazire, James; Jearanaiwitayakul, Tuksin; Semple, Malcolm G.; Openshaw, Peter J. M.; Baillie, J. Kenneth; Baillie, J. Kenneth; Semple, Malcolm G.; Openshaw, Peter J. M.; [...]

    The P323L substitution in the SARS-CoV-2 polymerase (NSP12) confers a selective advantage during infection

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    Springer Science and Business Media LLC, 2023

    Published in: Genome Biology, 24 (2023) 1

  7. Sullivan, Michael K; Lees, Jennifer S; Drake, Thomas M; Docherty, Annemarie B; Oates, Georgia; Hardwick, Hayley E; Russell, Clark D; Merson, Laura; Dunning, Jake; Nguyen-Van-Tam, Jonathan S; Openshaw, Peter; Harrison, Ewen M; Baillie, J Kenneth; Baillie, J Kenneth; Semple, Malcolm G; Openshaw, Peter J M; Carson, Gail; Alex, Beatrice; Bach, Benjamin; Barclay, Wendy S; Bogaert, Debby; Chand, Meera; Cooke, Graham S; Docherty, Annemarie B; [...]

    Acute kidney injury in patients hospitalized with COVID-19 from the ISARIC WHO CCP-UK Study: a prospective, multicentre cohort study

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    Oxford University Press (OUP), 2022

    Published in: Nephrology Dialysis Transplantation, 37 (2022) 2, Seite 271-284

  8. Närhi, Fiina; Moonesinghe, S Ramani; Shenkin, Susan D; Drake, Thomas M; Mulholland, Rachel H; Donegan, Cara; Dunning, Jake; Fairfield, Cameron J; Girvan, Michelle; Hardwick, Hayley E; Ho, Antonia; Leeming, Gary; Nguyen-Van-Tam, Jonathan S; Pius, Riinu; Russell, Clark D; Shaw, Catherine A; Spencer, Rebecca G; Turtle, Lance; Openshaw, Peter J M; Baillie, J Kenneth; Harrison, Ewen M; Semple, Malcolm G; Docherty, Annemarie B; Baillie, J Kenneth; [...]

    Implementation of corticosteroids in treatment of COVID-19 in the ISARIC WHO Clinical Characterisation Protocol UK: prospective, cohort study

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    Elsevier BV, 2022

    Published in: The Lancet Digital Health, 4 (2022) 4, Seite e220-e234

  9. Relph, Katharine A; Russell, Clark D; Fairfield, Cameron J; Turtle, Lance; de Silva, Thushan I; Siggins, Matthew K; Drake, Thomas M; Thwaites, Ryan S; Abrams, Simon; Moore, Shona C; Hardwick, Hayley E; Oosthuyzen, Wilna; Harrison, Ewen M; Docherty, Annemarie B; Openshaw, Peter J M; Baillie, J Kenneth; Semple, Malcolm G; Ho, Antonia; Baillie, J Kenneth; Semple, Malcolm G; Openshaw, Peter J M; Carson, Gail; Alex, Beatrice; Bach, Benjamin; [...]

    Procalcitonin Is Not a Reliable Biomarker of Bacterial Coinfection in People With Coronavirus Disease 2019 Undergoing Microbiological Investigation at the Time of Hospital Admission

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    Oxford University Press (OUP), 2022

    Published in: Open Forum Infectious Diseases, 9 (2022) 5

  10. Russell, Clark D; Fairfield, Cameron J; Drake, Thomas M; Turtle, Lance; Seaton, R Andrew; Wootton, Dan G; Sigfrid, Louise; Harrison, Ewen M; Docherty, Annemarie B; de Silva, Thushan I; Egan, Conor; Pius, Riinu; Hardwick, Hayley E; Merson, Laura; Girvan, Michelle; Dunning, Jake; Nguyen-Van-Tam, Jonathan S; Openshaw, Peter J M; Baillie, J Kenneth; Semple, Malcolm G; Ho, Antonia; Baillie, J Kenneth; Semple, Malcolm G; Openshaw, Peter JM; [...]

    Co-infections, secondary infections, and antimicrobial use in patients hospitalised with COVID-19 during the first pandemic wave from the ISARIC WHO CCP-UK study: a multicentre, prospective cohort study

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    Elsevier BV, 2021

    Published in: The Lancet Microbe, 2 (2021) 8, Seite e354-e365

  11. Leclerc, Quentin J.; Fuller, Naomi M.; Keogh, Ruth H.; Diaz-Ordaz, Karla; Sekula, Richard; Semple, Malcolm G.; Baillie, J. Kenneth; Semple, Malcolm G.; Openshaw, Peter J. M.; Carson, Gail; Alex, Beatrice; Bach, Benjamin; Barclay, Wendy S.; Bogaert, Debby; Chand, Meera; Cooke, Graham S.; Docherty, Annemarie B.; Dunning, Jake; da Silva Filipe, Ana; Fletcher, Tom; Green, Christopher A.; Harrison, Ewen M.; Hiscox, Julian A.; Ho, Antonia Ying Wai; [...]

    Importance of patient bed pathways and length of stay differences in predicting COVID-19 hospital bed occupancy in England

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    Springer Science and Business Media LLC, 2021

    Published in: BMC Health Services Research, 21 (2021) 1