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Siggel, Marc [Author]; Kehl, Sebastian [Author]; Reuter, Klaus [Author]; Köfinger, Jürgen [Author]; Hummer, Gerhard [Author]

TriMem: a parallelized hybrid Monte Carlo software for efficient simulations of lipid membranes

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Frankfurt am Main: Universitätsbibliothek Johann Christian Senckenberg, 2022
Siggel, Marc [Author]; Kehl, Sebastian [Author]; Reuter, Klaus [Author]; Köfinger, Jürgen [Author]; Hummer, Gerhard [Author]

TriMem: A parallelized hybrid Monte Carlo software for efficient simulations of lipid membranes

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Publication Server of Goethe University Frankfurt am Main, 2022-11-01
Siggel, Marc [Author]; Bhaskara, Ramachandra M. [Author]; Moesser, Melanie K. [Author]; Đikić, Ivan [Author]; Hummer, Gerhard [Author]

FAM134B-RHD protein clustering drives spontaneous budding of asymmetric membranes

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Frankfurt am Main: Universitätsbibliothek Johann Christian Senckenberg, 2021
Ferreira, Josie [Author]; Pražák, Vojtěch [Author]; Vasishtan, Daven [Author]; Siggel, Marc [Author]; Hentzschel, Franziska [Author]; Binder, Annika [Author]; Pietsch, Emma [Author]; Kosinski, Jan [Author]; Frischknecht, Friedrich [Author]; Gilberger, Tim W. [Author]; Grünewald, Kay [Author]

Variable microtubule architecture in the malaria parasite

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2023

Published in: Nature Communications ; 14(2023), Artikel-ID 1216, Seite 1-17
Mosalaganti, Shyamal Narayan [Author]; Obarska-Kosinska, Agnieszka [Author]; Siggel, Marc [Author]; Turoňová, Beata [Author]; Zimmerli, Christian Eugen [Author]; Buczak, Katarzyna [Author]; Schmidt, Florian H. [Author]; Margiotta, Erica [Author]; Mackmull, Marie-Therese [Author]; Hagen, Wim [Author]; Hummer, Gerhard [Author]; Beck, Martin [Author]; Kosinski, Jan [Author]

Artificial intelligence reveals nuclear pore complexity

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Frankfurt am Main: Universitätsbibliothek Johann Christian Senckenberg, 2021
Maurer, Valentin J.; Siggel, Marc; Kosinski, Jan

PyTME (Python Template Matching Engine): A fast, flexible, and multi-purpose template matching library for cryogenic electron microscopy data

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Elsevier BV, 2024

Published in: SoftwareX, 25 (2024), Seite 101636
Maurer, Valentin J.; Siggel, Marc; Kosinski, Jan

What shapes template-matching performance in cryogenic electron tomography in situ?

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International Union of Crystallography (IUCr), 2024

Published in: Acta Crystallographica Section D Structural Biology, 80 (2024) 6, Seite 410-420
Siggel, Marc; Bhaskara, Ramachandra M.; Hummer, Gerhard

Phospholipid Scramblases Remodel the Shape of Asymmetric Membranes

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American Chemical Society (ACS), 2019

Published in: The Journal of Physical Chemistry Letters, 10 (2019) 20, Seite 6351-6354
Siggel, Marc; Kehl, Sebastian; Reuter, Klaus; Köfinger, Jürgen; Hummer, Gerhard

TriMem: A parallelized hybrid Monte Carlo software for efficient simulations of lipid membranes

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AIP Publishing, 2022

Published in: The Journal of Chemical Physics, 157 (2022) 17
Gecht, Michael; Siggel, Marc; Linke, Max; Hummer, Gerhard; Köfinger, Jürgen

MDBenchmark: A toolkit to optimize the performance of molecular dynamics simulations

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AIP Publishing, 2020

Published in: The Journal of Chemical Physics, 153 (2020) 14
von Bülow, Sören; Siggel, Marc; Linke, Max; Hummer, Gerhard

Dynamic cluster formation determines viscosity and diffusion in dense protein solutions

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Proceedings of the National Academy of Sciences, 2019

Published in: Proceedings of the National Academy of Sciences, 116 (2019) 20, Seite 9843-9852
Rudack, Till; McGreevy, Ryan; Siggel, Marc; Schulten, Klaus

A Tool to Integrate User Expertise into Building Atomic Level Models for Large Biomolecular Systems

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Elsevier BV, 2016

Published in: Biophysical Journal, 110 (2016) 3, Seite 346a
Siggel, Marc; Bhaskara, Ramachandra M.; Moesser, Melanie K.; D̵ikić, Ivan; Hummer, Gerhard

FAM134B-RHD Protein Clustering Drives Spontaneous Budding of Asymmetric Membranes

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American Chemical Society (ACS), 2021

Published in: The Journal of Physical Chemistry Letters, 12 (2021) 7, Seite 1926-1931
Scheurer, Maximilian; Rodenkirch, Peter; Siggel, Marc; Bernardi, Rafael C.; Schulten, Klaus; Tajkhorshid, Emad; Rudack, Till

PyContact: Rapid, Customizable, and Visual Analysis of Noncovalent Interactions in MD Simulations

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Elsevier BV, 2018

Published in: Biophysical Journal, 114 (2018) 3, Seite 577-583
Caimi, Stefano; Cingolani, Alberto; Jaquet, Baptiste; Siggel, Marc; Lattuada, Marco; Morbidelli, Massimo

Tracking of Fluorescently Labeled Polymer Particles Reveals Surface Effects during Shear-Controlled Aggregation

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American Chemical Society (ACS), 2017

Published in: Langmuir, 33 (2017) 49, Seite 14038-14044
Wu, Xudong; Siggel, Marc; Ovchinnikov, Sergey; Mi, Wei; Svetlov, Vladimir; Nudler, Evgeny; Liao, Maofu; Hummer, Gerhard; Rapoport, Tom A.

Structural basis of ER-associated protein degradation mediated by the Hrd1 ubiquitin ligase complex

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American Association for the Advancement of Science (AAAS), 2020

Published in: Science, 368 (2020) 6489
Ferreira, Josie L.; Pražák, Vojtěch; Vasishtan, Daven; Siggel, Marc; Hentzschel, Franziska; Binder, Annika M.; Pietsch, Emma; Kosinski, Jan; Frischknecht, Friedrich; Gilberger, Tim W.; Grünewald, Kay

Variable microtubule architecture in the malaria parasite

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Springer Science and Business Media LLC, 2023

Published in: Nature Communications, 14 (2023) 1
Yu, Miao; Heidari, Maziar; Mikhaleva, Sofya; Tan, Piau Siong; Mingu, Sara; Ruan, Hao; Reinkemeier, Christopher D.; Obarska-Kosinska, Agnieszka; Siggel, Marc; Beck, Martin; Hummer, Gerhard; Lemke, Edward A.

Visualizing the disordered nuclear transport machinery in situ

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Springer Science and Business Media LLC, 2023

Published in: Nature, 617 (2023) 7959, Seite 162-169
Ho, Nga T.; Siggel, Marc; Camacho, Karen V.; Bhaskara, Ramachandra M.; Hicks, Jacqueline M.; Yao, Yun-Chiao; Zhang, Yuliang; Köfinger, Jürgen; Hummer, Gerhard; Noy, Aleksandr

Membrane fusion and drug delivery with carbon nanotube porins

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Proceedings of the National Academy of Sciences, 2021

Published in: Proceedings of the National Academy of Sciences, 118 (2021) 19
Sitarska, Ewa; Almeida, Silvia Dias; Beckwith, Marianne Sandvold; Stopp, Julian; Czuchnowski, Jakub; Siggel, Marc; Roessner, Rita; Tschanz, Aline; Ejsing, Christer; Schwab, Yannick; Kosinski, Jan; Sixt, Michael; Kreshuk, Anna; Erzberger, Anna; Diz-Muñoz, Alba

Sensing their plasma membrane curvature allows migrating cells to circumvent obstacles

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Springer Science and Business Media LLC, 2023

Published in: Nature Communications, 14 (2023) 1

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