• Medientyp: E-Artikel
  • Titel: The PATRIC Bioinformatics Resource Center: expanding data and analysis capabilities
  • Beteiligte: Davis, James J; Wattam, Alice R; Aziz, Ramy K; Brettin, Thomas; Butler, Ralph; Butler, Rory M; Chlenski, Philippe; Conrad, Neal; Dickerman, Allan; Dietrich, Emily M; Gabbard, Joseph L; Gerdes, Svetlana; Guard, Andrew; Kenyon, Ronald W; Machi, Dustin; Mao, Chunhong; Murphy-Olson, Dan; Nguyen, Marcus; Nordberg, Eric K; Olsen, Gary J; Olson, Robert D; Overbeek, Jamie C; Overbeek, Ross; Parrello, Bruce; [...]
  • Erschienen: Oxford University Press (OUP), 2019
  • Erschienen in: Nucleic Acids Research (2019)
  • Sprache: Englisch
  • DOI: 10.1093/nar/gkz943
  • ISSN: 0305-1048; 1362-4962
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  • Beschreibung: Abstract The PathoSystems Resource Integration Center (PATRIC) is the bacterial Bioinformatics Resource Center funded by the National Institute of Allergy and Infectious Diseases (https://www.patricbrc.org). PATRIC supports bioinformatic analyses of all bacteria with a special emphasis on pathogens, offering a rich comparative analysis environment that provides users with access to over 250 000 uniformly annotated and publicly available genomes with curated metadata. PATRIC offers web-based visualization and comparative analysis tools, a private workspace in which users can analyze their own data in the context of the public collections, services that streamline complex bioinformatic workflows and command-line tools for bulk data analysis. Over the past several years, as genomic and other omics-related experiments have become more cost-effective and widespread, we have observed considerable growth in the usage of and demand for easy-to-use, publicly available bioinformatic tools and services. Here we report the recent updates to the PATRIC resource, including new web-based comparative analysis tools, eight new services and the release of a command-line interface to access, query and analyze data.
  • Zugangsstatus: Freier Zugang