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Beckstette, Michael [Author]

Index-based algorithms for motif search and their integration in a system for differential genome analysis

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https://nbn-resolving.org/urn:nbn:de:hbz:361-13258

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Bielefeld University, 2007
Beckstette, Michael [Author]

Index-based algorithms for motif search and their integration in a system for differential genome analysis

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https://nbn-resolving.org/urn:nbn:de:hbz:361-13258

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noah.nrw, 2007
Sauer, Tilman [Author] ; Waack, Stephan [Contributor]; Wingender, Edgar [Contributor]

Evaluierung des phylogenetischen Footprintings und dessen Anwendung zur verbesserten Vorhersage von Transkriptionsfaktor-Bindestellen ; Evaluation of phylogenetic footprinting and its application to an improved prediction of transcription factor binding sites

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http://hdl.handle.net/11858/00-1735-0000-0006-B383-8

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Georg-August-Universität Göttingen: eDiss, 2013-01-30T23:50:56Z
Sato, Kengo; Morita, Kensuke; Sakakibara, Yasubumi

PSSMTS: position specific scoring matrices on tree structures

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Springer Science and Business Media LLC, 2007

Published in: Journal of Mathematical Biology
Henikoff, Jorja G.; Henikoff, Steven

Using substitution probabilities to improve position-specific scoring matrices

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Oxford University Press (OUP), 1996

Published in: Bioinformatics
Liu, Daniel; Steinegger, Martin

Block Aligner: an adaptive SIMD-accelerated aligner for sequences and position-specific scoring matrices

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Oxford University Press (OUP), 2023

Published in: Bioinformatics
Sanchez-Garcia, Ruben; Sorzano, Carlos; Carazo, Jose; Segura, Joan

3DCONS-DB: A Database of Position-Specific Scoring Matrices in Protein Structures

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MDPI AG, 2017

Published in: Molecules
Kerpedjiev, Peter; Frellsen, Jes; Lindgreen, Stinus; Krogh, Anders

Adaptable probabilistic mapping of short reads using position specific scoring matrices

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Springer Science and Business Media LLC, 2014

Published in: BMC Bioinformatics
Maurer-Stroh, Sebastian; Debulpaep, Maja; Kuemmerer, Nico; de la Paz, Manuela Lopez; Martins, Ivo Cristiano; Reumers, Joke; Morris, Kyle L; Copland, Alastair; Serpell, Louise; Serrano, Luis; Schymkowitz, Joost W H; Rousseau, Frederic

Addendum: Exploring the sequence determinants of amyloid structure using position-specific scoring matrices

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Springer Science and Business Media LLC, 2010

Published in: Nature Methods
Maurer-Stroh, Sebastian; Debulpaep, Maja; Kuemmerer, Nico; de la Paz, Manuela Lopez; Martins, Ivo Cristiano; Reumers, Joke; Morris, Kyle L; Copland, Alastair; Serpell, Louise; Serrano, Luis; Schymkowitz, Joost W H; Rousseau, Frederic

Erratum: Corrigendum: Exploring the sequence determinants of amyloid structure using position-specific scoring matrices

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Springer Science and Business Media LLC, 2010

Published in: Nature Methods
Maurer-Stroh, Sebastian; Debulpaep, Maja; Kuemmerer, Nico; de la Paz, Manuela Lopez; Martins, Ivo Cristiano; Reumers, Joke; Morris, Kyle L; Copland, Alastair; Serpell, Louise; Serrano, Luis; Schymkowitz, Joost W H; Rousseau, Frederic

Exploring the sequence determinants of amyloid structure using position-specific scoring matrices

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Springer Science and Business Media LLC, 2010

Published in: Nature Methods
Kinjo, Akira R.; Nakamura, Haruki

Nature of Protein Family Signatures: Insights from Singular Value Analysis of Position-Specific Scoring Matrices

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Public Library of Science (PLoS), 2008

Published in: PLoS ONE
Lim, Shen Jean; Tong, Joo Chuan; Chew, Fook Tim; Tammi, Martti T

The value of position-specific scoring matrices for assessment of protein allegenicity

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Springer Science and Business Media LLC, 2008

Published in: BMC Bioinformatics
Beckstette, Michael; Homann, Robert; Giegerich, Robert; Kurtz, Stefan

Fast index based algorithms and software for matching position specific scoring matrices

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Springer Science and Business Media LLC, 2006

Published in: BMC Bioinformatics
Gowri, V. S.

MulPSSM: a database of multiple position-specific scoring matrices of protein domain families

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Oxford University Press (OUP), 2006

Published in: Nucleic Acids Research
Frith, M. C.

Statistical significance of clusters of motifs represented by position specific scoring matrices in nucleotide sequences

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Oxford University Press (OUP), 2002

Published in: Nucleic Acids Research
Ioannides, Andreas N; Katsani, Katerina R; Ouzounis, Christos A; Promponas, Vasilis J

A library of sensitive position-specific scoring matrices for high-throughput identification of nuclear pore complex subunits

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Oxford University Press (OUP), 2023

Published in: NAR Genomics and Bioinformatics
Le, Nguyen‐Quoc‐Khanh; Ho, Quang‐Thai; Ou, Yu‐Yen

Incorporating deep learning with convolutional neural networks and position specific scoring matrices for identifying electron transport proteins

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Wiley, 2017

Published in: Journal of Computational Chemistry
Ou, Yu‐Yen; Chen, Shu‐An; Chang, Yun‐Min; Velmurugan, Devadasan; Fukui, Kazuhiko; Michael Gromiha, M.

Identification of efflux proteins using efficient radial basis function networks with position‐specific scoring matrices and biochemical properties

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Wiley, 2013

Published in: Proteins: Structure, Function, and Bioinformatics
Ou, Yu‐Yen; Chen, Shu‐An; Gromiha, M. Michael

Classification of transporters using efficient radial basis function networks with position‐specific scoring matrices and biochemical properties

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Wiley, 2010

Published in: Proteins: Structure, Function, and Bioinformatics

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