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  1. Vöhringer, Harald S.; Sanderson, Theo; Sinnott, Matthew; De Maio, Nicola; Nguyen, Thuy; Goater, Richard; Schwach, Frank; Harrison, Ian; Hellewell, Joel; Ariani, Cristina V.; Gonçalves, Sonia; Jackson, David K.; Johnston, Ian; Jung, Alexander W.; Saint, Callum; Sillitoe, John; Suciu, Maria; Goldman, Nick; Panovska-Griffiths, Jasmina; Abnizova, Irina; Aigrain, Louise; Alderton, Alex; Ali, Mozam; Allen, Laura; [...]

    Publisher Correction: Genomic reconstruction of the SARS CoV-2 epidemic in England

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    Springer Science and Business Media LLC, 2022

    Published in: Nature

  2. Vöhringer, Harald S.; Sanderson, Theo; Sinnott, Matthew; De Maio, Nicola; Nguyen, Thuy; Goater, Richard; Schwach, Frank; Harrison, Ian; Hellewell, Joel; Ariani, Cristina V.; Gonçalves, Sonia; Jackson, David K.; Johnston, Ian; Jung, Alexander W.; Saint, Callum; Sillitoe, John; Suciu, Maria; Goldman, Nick; Panovska-Griffiths, Jasmina; Abnizova, Irina; Aigrain, Louise; Alderton, Alex; Ali, Mozam; Allen, Laura; [...]

    Genomic reconstruction of the SARS-CoV-2 epidemic in England

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    Springer Science and Business Media LLC, 2021

    Published in: Nature

  3. Romagnoni, Alberto; Jégou, Simon; Van Steen, Kristel; Wainrib, Gilles; Hugot, Jean-Pierre; Peyrin-Biroulet, Laurent; Chamaillard, Mathias; Colombel, Jean-Frederick; Cottone, Mario; D’Amato, Mauro; D’Incà, Renata; Halfvarson, Jonas; Henderson, Paul; Karban, Amir; Kennedy, Nicholas A.; Khan, Mohammed Azam; Lémann, Marc; Levine, Arie; Massey, Dunecan; Milla, Monica; Ng, Sok Meng Evelyn; Oikonomou, Ioannis; Peeters, Harald; Proctor, Deborah D.; [...]

    Comparative performances of machine learning methods for classifying Crohn Disease patients using genome-wide genotyping data

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    Springer Science and Business Media LLC, 2019

    Published in: Scientific Reports

  4. Kemp, Steven A.; Collier, Dami A.; Datir, Rawlings P.; Ferreira, Isabella A. T. M.; Gayed, Salma; Jahun, Aminu; Hosmillo, Myra; Rees-Spear, Chloe; Mlcochova, Petra; Lumb, Ines Ushiro; Roberts, David J.; Chandra, Anita; Temperton, Nigel; Baker, Stephen; Dougan, Gordon; Hess, Christoph; Kingston, Nathalie; Lehner, Paul J.; Lyons, Paul A.; Matheson, Nicholas J.; Owehand, Willem H.; Saunders, Caroline; Summers, Charlotte; Thaventhiran, James E. D.; [...]

    Author Correction: SARS-CoV-2 evolution during treatment of chronic infection

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    Springer Science and Business Media LLC, 2022

    Published in: Nature

  5. Collier, Dami A.; De Marco, Anna; Ferreira, Isabella A. T. M.; Meng, Bo; Datir, Rawlings P.; Walls, Alexandra C.; Kemp, Steven A.; Bassi, Jessica; Pinto, Dora; Silacci-Fregni, Chiara; Bianchi, Siro; Tortorici, M. Alejandra; Bowen, John; Culap, Katja; Jaconi, Stefano; Cameroni, Elisabetta; Snell, Gyorgy; Pizzuto, Matteo S.; Pellanda, Alessandra Franzetti; Garzoni, Christian; Riva, Agostino; Baker, Stephen; Dougan, Gordon; Hess, Christoph; [...]

    Author Correction: Sensitivity of SARS-CoV-2 B.1.1.7 to mRNA vaccine-elicited antibodies

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    Springer Science and Business Media LLC, 2022

    Published in: Nature

  6. Meng, Bo; Kemp, Steven A.; Papa, Guido; Datir, Rawlings; Ferreira, Isabella A.T.M.; Marelli, Sara; Harvey, William T.; Lytras, Spyros; Mohamed, Ahmed; Gallo, Giulia; Thakur, Nazia; Collier, Dami A.; Mlcochova, Petra; Duncan, Lidia M.; Carabelli, Alessandro M.; Kenyon, Julia C.; Lever, Andrew M.; De Marco, Anna; Saliba, Christian; Culap, Katja; Cameroni, Elisabetta; Matheson, Nicholas J.; Piccoli, Luca; Corti, Davide; [...]

    Recurrent emergence of SARS-CoV-2 spike deletion H69/V70 and its role in the Alpha variant B.1.1.7

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    Elsevier BV, 2021

    Published in: Cell Reports

  7. Kemp, Steven A.; Collier, Dami A.; Datir, Rawlings P.; Ferreira, Isabella A. T. M.; Gayed, Salma; Jahun, Aminu; Hosmillo, Myra; Rees-Spear, Chloe; Mlcochova, Petra; Lumb, Ines Ushiro; Roberts, David J.; Chandra, Anita; Temperton, Nigel; Baker, Stephen; Dougan, Gordon; Hess, Christoph; Kingston, Nathalie; Lehner, Paul J.; Lyons, Paul A.; Matheson, Nicholas J.; Owehand, Willem H.; Saunders, Caroline; Summers, Charlotte; Thaventhiran, James E. D.; [...]

    SARS-CoV-2 evolution during treatment of chronic infection

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    Springer Science and Business Media LLC, 2021

    Published in: Nature

  8. Collier, Dami A.; De Marco, Anna; Ferreira, Isabella A. T. M.; Meng, Bo; Datir, Rawlings P.; Walls, Alexandra C.; Kemp, Steven A.; Bassi, Jessica; Pinto, Dora; Silacci-Fregni, Chiara; Bianchi, Siro; Tortorici, M. Alejandra; Bowen, John; Culap, Katja; Jaconi, Stefano; Cameroni, Elisabetta; Snell, Gyorgy; Pizzuto, Matteo S.; Pellanda, Alessandra Franzetti; Garzoni, Christian; Riva, Agostino; Baker, Stephen; Dougan, Gordon; Hess, Christoph; [...]

    Sensitivity of SARS-CoV-2 B.1.1.7 to mRNA vaccine-elicited antibodies

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    Springer Science and Business Media LLC, 2021

    Published in: Nature

  9. Bodea, Corneliu A.; Neale, Benjamin M.; Ripke, Stephan; Daly, Mark J.; Devlin, Bernie; Roeder, Kathryn; Barclay, Murray; Peyrin-Biroulet, Laurent; Chamaillard, Mathias; Colombel, Jean-Frederick; Cottone, Mario; Croft, Anthony; D’Incà, Renata; Halfvarson, Jonas; Hanigan, Katherine; Henderson, Paul; Hugot, Jean-Pierre; Karban, Amir; Kennedy, Nicholas A.; Khan, Mohammed Azam; Lémann, Marc; Levine, Arie; Massey, Dunecan; Milla, Monica; [...]

    A Method to Exploit the Structure of Genetic Ancestry Space to Enhance Case-Control Studies

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    Elsevier BV, 2016

    Published in: The American Journal of Human Genetics

  10. Kläser, Kerstin; Molteni, Erika; Graham, Mark; Canas, Liane S.; Österdahl, Marc F.; Antonelli, Michela; Chen, Liyuan; Deng, Jie; Murray, Benjamin; Kerfoot, Eric; Wolf, Jonathan; May, Anna; Fox, Ben; Capdevila, Joan; Aanensen, David M.; Abudahab, Khalil; Adams, Helen; Adams, Alexander; Afifi, Safiah; Aggarwal, Dinesh; Ahmad, Shazaad S. Y.; Aigrain, Louise; Alcolea-Medina, Adela; Alikhan, Nabil-Fareed; [...]

    COVID-19 due to the B.1.617.2 (Delta) variant compared to B.1.1.7 (Alpha) variant of SARS-CoV-2: a prospective observational cohort study

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    Springer Science and Business Media LLC, 2022

    Published in: Scientific Reports

  11. Nickbakhsh, Sema; Hughes, Joseph; Christofidis, Nicolaos; Griffiths, Emily; Shaaban, Sharif; Enright, Jessica; Smollett, Katherine; Nomikou, Kyriaki; Palmalux, Natasha; Tong, Lily; Carmichael, Stephen; Sreenu, Vattipally B.; Orton, Richard; Goldstein, Emily J.; Tomb, Rachael M.; Robson, Samuel C.; Connor, Thomas R.; Loman, Nicholas J.; Golubchik, Tanya; Nunez, Rocio T. Martinez; Bonsall, David; Rambaut, Andrew; Snell, Luke B.; Livett, Rich; [...]

    Genomic epidemiology of SARS-CoV-2 in a university outbreak setting and implications for public health planning

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    Springer Science and Business Media LLC, 2022

    Published in: Scientific Reports

  12. Eales, Oliver; Page, Andrew J.; de Oliveira Martins, Leonardo; Wang, Haowei; Bodinier, Barbara; Haw, David; Jonnerby, Jakob; Atchison, Christina; Robson, Samuel C.; Connor, Thomas R.; Loman, Nicholas J.; Golubchik, Tanya; Nunez, Rocio T. Martinez; Bonsall, David; Rambaut, Andrew; Snell, Luke B.; Livett, Rich; Ludden, Catherine; Corden, Sally; Nastouli, Eleni; Nebbia, Gaia; Johnston, Ian; Lythgoe, Katrina; Torok, M. Estee; [...]

    SARS-CoV-2 lineage dynamics in England from September to November 2021: high diversity of Delta sub-lineages and increased transmissibility of AY.4.2

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    Springer Science and Business Media LLC, 2022

    Published in: BMC Infectious Diseases

  13. Aggarwal, Dinesh; Warne, Ben; Jahun, Aminu S.; Hamilton, William L.; Fieldman, Thomas; du Plessis, Louis; Hill, Verity; Blane, Beth; Watkins, Emmeline; Wright, Elizabeth; Hall, Grant; Ludden, Catherine; Myers, Richard; Hosmillo, Myra; Chaudhry, Yasmin; Pinckert, Malte L.; Georgana, Iliana; Izuagbe, Rhys; Leek, Danielle; Nsonwu, Olisaeloka; Hughes, Gareth J.; Packer, Simon; Page, Andrew J.; Metaxaki, Marina; [...]

    Genomic epidemiology of SARS-CoV-2 in a UK university identifies dynamics of transmission

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    Springer Science and Business Media LLC, 2022

    Published in: Nature Communications

  14. Aggarwal, Dinesh; Page, Andrew J.; Schaefer, Ulf; Savva, George M.; Myers, Richard; Volz, Erik; Ellaby, Nicholas; Platt, Steven; Groves, Natalie; Gallagher, Eileen; Tumelty, Niamh M.; Le Viet, Thanh; Hughes, Gareth J.; Chen, Cong; Turner, Charlie; Logan, Sophie; Harrison, Abbie; Koshy, Cherian; Ash, Amy; Wise, Emma; Moore, Nathan; Mori, Matilde; Cortes, Nick; Lynch, Jessica; [...]

    Genomic assessment of quarantine measures to prevent SARS-CoV-2 importation and transmission

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    Springer Science and Business Media LLC, 2022

    Published in: Nature Communications

  15. Graham, Mark S; Sudre, Carole H; May, Anna; Antonelli, Michela; Murray, Benjamin; Varsavsky, Thomas; Kläser, Kerstin; Canas, Liane S; Molteni, Erika; Modat, Marc; Drew, David A; Nguyen, Long H; Polidori, Lorenzo; Selvachandran, Somesh; Hu, Christina; Capdevila, Joan; Hammers, Alexander; Chan, Andrew T; Wolf, Jonathan; Spector, Tim D; Steves, Claire J; Ourselin, Sebastien; Koshy, Cherian; Ash, Amy; [...]

    Changes in symptomatology, reinfection, and transmissibility associated with the SARS-CoV-2 variant B.1.1.7: an ecological study

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    Elsevier BV, 2021

    Published in: The Lancet Public Health

  16. de Silva, Thushan I.; Liu, Guihai; Lindsey, Benjamin B.; Dong, Danning; Moore, Shona C.; Hsu, Nienyun Sharon; Shah, Dhruv; Wellington, Dannielle; Mentzer, Alexander J.; Angyal, Adrienn; Brown, Rebecca; Parker, Matthew D.; Ying, Zixi; Yao, Xuan; Turtle, Lance; Dunachie, Susanna; Maini, Mala K.; Ogg, Graham; Knight, Julian C.; Peng, Yanchun; Rowland-Jones, Sarah L.; Dong, Tao; Aanensen, David M.; Abudahab, Khalil; [...]

    The impact of viral mutations on recognition by SARS-CoV-2 specific T cells

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    Elsevier BV, 2021

    Published in: iScience

  17. Volz, Erik; Hill, Verity; McCrone, John T.; Price, Anna; Jorgensen, David; O’Toole, Áine; Southgate, Joel; Johnson, Robert; Jackson, Ben; Nascimento, Fabricia F.; Rey, Sara M.; Nicholls, Samuel M.; Colquhoun, Rachel M.; da Silva Filipe, Ana; Shepherd, James; Pascall, David J.; Shah, Rajiv; Jesudason, Natasha; Li, Kathy; Jarrett, Ruth; Pacchiarini, Nicole; Bull, Matthew; Geidelberg, Lily; Siveroni, Igor; [...]

    Evaluating the Effects of SARS-CoV-2 Spike Mutation D614G on Transmissibility and Pathogenicity

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    Elsevier BV, 2021

    Published in: Cell

  18. Lundqvist, Andreas; van Hoef, Vincent; Zhang, Xiaonan; Wennerberg, Erik; Lorent, Julie; Witt, Kristina; Sanz, Laia Masvidal; Liang, Shuo; Murray, Shannon; Larsson, Ola; Kiessling, Rolf; Mao, Yumeng; Sidhom, John-William; Bessell, Catherine A.; Havel, Jonathan; Schneck, Jonathan; Chan, Timothy A.; Sachsenmeier, Eliot; Woods, David; Berglund, Anders; Ramakrishnan, Rupal; Sodre, Andressa; Weber, Jeffrey; Zappasodi, Roberta; [...]

    31st Annual Meeting and Associated Programs of the Society for Immunotherapy of Cancer (SITC 2016): part one : National Harbor, MD, USA. 9-13 November 2016

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    BMJ, 2016

    Published in: Journal for ImmunoTherapy of Cancer

  19. Kousathanas, Athanasios; Pairo-Castineira, Erola; Rawlik, Konrad; Stuckey, Alex; Odhams, Christopher A.; Walker, Susan; Russell, Clark D.; Malinauskas, Tomas; Wu, Yang; Millar, Jonathan; Shen, Xia; Elliott, Katherine S.; Griffiths, Fiona; Oosthuyzen, Wilna; Morrice, Kirstie; Keating, Sean; Wang, Bo; Rhodes, Daniel; Klaric, Lucija; Zechner, Marie; Parkinson, Nick; Siddiq, Afshan; Goddard, Peter; Donovan, Sally; [...]

    Whole-genome sequencing reveals host factors underlying critical COVID-19

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    Springer Science and Business Media LLC, 2022

    Published in: Nature