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  2. Kitiporn Plaimas [Author]; Mallm, Jan-Philipp [Author]; Oswald, Marcus [Author]; Svara, Fabian [Author]; Sourjik, Victor [Author]; Eils, Roland [Author]; König, Rainer [Author]

    Machine learning based analyses on metabolic networks supports high-throughput knockout screens

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    2008

    Published in: BMC systems biology ; 2(2008) Artikel-Nr. 67, 11 Seiten

  3. Wong, John K. L. [Author]; Jassowicz, Lena [Author]; Herold-Mende, Christel [Author]; Seiffert, Martina [Author]; Mallm, Jan-Philipp [Author]; Lichter, Peter [Author]; Zapatka, Marc [Author]

    scSNPdemux : a sensitive demultiplexing pipeline using single nucleotide polymorphisms for improved pooled single-cell RNA sequencing analysis

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    31 August 2023

    Published in: BMC bioinformatics ; 24(2023), 1, Artikel-ID 326

  4. Schuster, Linda [Author]; Syed, Afzal Pasha [Author]; Tirier, Stephan Marius [Author]; Steiger, Simon [Author]; Seufert, Isabelle [Author]; Becker, Heiko [Author]; Duque Afonso, Jesús [Author]; Ma, Tobias [Author]; Ogawa, Seishi [Author]; Mallm, Jan-Philipp [Author]; Lübbert, Michael [Author]; Rippe, Karsten [Author]

    Progenitor-like cell type of an MLL-EDC4 fusion in acute myeloid leukemia : to the editor

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    November 20, 2023

    Published in: Blood advances ; 7(2023), 22, Seite 7079-7083

  5. Piroeva, Kristan V. [Author]; McDonald, Charlotte [Author]; Xanthopoulos, Charalampos [Author]; Fox, Chelsea [Author]; Clarkson, Christopher T. [Author]; Mallm, Jan-Philipp [Author]; Vainshtein, Yevhen [Author]; Ruje, Luminita [Author]; Klett, Lara C. [Author]; Stilgenbauer, Stephan [Author]; Mertens, Daniel [Author]; Kostareli, Efterpi [Author]; Rippe, Karsten [Author]; Teif, Vladimir [Author]

    Nucleosome repositioning in chronic lymphocytic leukemia

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    December 2023

    Published in: Genome research ; 33(2023), 10, Seite 1649-1661

  6. Derrien, Jennifer [Author]; Guérin-Charbonnel, Catherine [Author]; Gaborit, Victor [Author]; Campion, Loïc [Author]; Devic, Magali [Author]; Douillard, Elise [Author]; Roi, Nathalie [Author]; Avet-Loiseau, Hervé [Author]; Decaux, Olivier [Author]; Facon, Thierry [Author]; Mallm, Jan-Philipp [Author]; Eils, Roland [Author]; Munshi, Nikhil C. [Author]; Moreau, Philippe [Author]; Herrmann, Carl [Author]; Magrangeas, Florence [Author]; Minvielle, Stéphane [Author]

    The DNA methylation landscape of multiple myeloma shows extensive inter- and intrapatient heterogeneity that fuels transcriptomic variability

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    09 August 2021

    Published in: Genome medicine ; 13(2021), Artikel-ID 127, Seite 1-21

  7. Wierzbińska, Justyna Anna [Author]; Toth, Reka [Author]; Ishaque, Naveed [Author]; Rippe, Karsten [Author]; Mallm, Jan-Philipp [Author]; Klett, Lara C. [Author]; Mertens, Daniel [Author]; Zenz, Thorsten [Author]; Hielscher, Thomas [Author]; Seifert, Marc [Author]; Küppers, Ralf [Author]; Assenov, Yassen [Author]; Lutsik, Pavlo [Author]; Stilgenbauer, Stephan [Author]; Rößner, Philipp M. [Author]; Seiffert, Martina [Author]; Byrd, John [Author]; Oakes, Christopher C. [Author]; Plass, Christoph [Author]; Lipka, Daniel [Author]

    Methylome-based cell-of-origin modeling (Methyl-COOM) identifies aberrant expression of immune regulatory molecules in CLL

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    18 March 2020

    Published in: Genome medicine ; 12(2020), Artikel-ID 29, Seite 1-19

  8. Roider, Tobias [Author]; Seufert, Julian [Author]; Uvarovskii, Alexey [Author]; Frauhammer, Felix [Author]; Bordas, Marie [Author]; Abedpour, Nima [Author]; Stolarczyk, Marta [Author]; Mallm, Jan-Philipp [Author]; Herbst, Sophie A. [Author]; Bruch, Peter-Martin [Author]; Balke-Want, Hyatt [Author]; Hundemer, Michael [Author]; Rippe, Karsten [Author]; Goeppert, Benjamin [Author]; Seiffert, Martina [Author]; Brors, Benedikt [Author]; Mechtersheimer, Gunhild [Author]; Zenz, Thorsten [Author]; Peifer, Martin [Author]; Chapuy, Björn [Author]; Schlesner, Matthias [Author]; Müller-Tidow, Carsten [Author]; Fröhling, Stefan [Author]; Huber, Wolfgang [Author]; [...]

    Dissecting intratumor heterogeneity of nodal B cell lymphomas at transcriptional, genetic, and drug response levels

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    Heidelberg: Universität, 2020-04-02

  13. Kasem, M Haidar; Jády, Attila; Mallm, Jan-Philipp; Glimm, Hanno; Dieter, Sebastian M.; Herbst, Friederike; Ball, Claudia R.

    Abstract 136: Single cell lineage analysis reveals clonal evolution and dynamic intra-clonal gene expression states during colorectal cancer progression

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    American Association for Cancer Research (AACR), 2023

    Published in: Cancer Research

  20. Ghasemi, David R; Okonechnikov, Konstantin; Tirier, Stephan; Rademacher, Anne; Mallm, Jan-Philipp; Ernst, Kati; Rippe, Karsten; Korshunov, Andrey; Pfister, Stefan M; Pajtler, Kristian W

    MEDB-60. Medulloblastoma with extensive nodularity mimics cerebellar development and differentiates along the granular precursor lineage

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    Oxford University Press (OUP), 2022

    Published in: Neuro-Oncology