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Media type:
Book
Title:
RNA 3D structure analysis and prediction
Contains:
Introduction
/ Michael Levitt
Modeling RNA Molecules
/ Neocles Leontis and Eric Westhof
Methods for Predicting RNA Secondary Structure
/ Kornelia Aigner, Fabian Dressen and Gerhard Steger
Why Can't We Predict RNA Structure At Atomic Resolution?
/ Parin Sripakdeevong, Kyle Beauchamp and Rhiju Das
Template-Based and Template-Free Modeling of RNA 3D Structure: Inspirations from Protein Structure Modeling
/ Kristian Rother, Magdalena Rother, Michał Boniecki, Tomasz Puton and Konrad Tomala, et al.
The RNA Folding Problems: Different Levels of sRNA Structure Prediction
/ Fredrick Sijenyi, Pirro Saro, Zheng Ouyang, Kelly Damm-Ganamet and Marcus Wood, et al.
Computational Prediction and Modeling Aid in the Discovery of a Conformational Switch Controlling Replication and Translation in a Plus-Strand RNA Virus
/ Wojciech K. Kasprzak and Bruce A. Shapiro
Methods for Building and Refining 3D Models of RNA
/ Samuel C. Flores, Magdalena Jonikas, Christopher Bruns, Joy P. Ku and Jeanette Schmidt, et al.
Multiscale Modeling of RNA Structure and Dynamics
/ Feng Ding and Nikolay V. Dokholyan
Statistical Mechanical Modeling of RNA Folding: From Free Energy Landscape to Tertiary Structural Prediction
/ Song Cao and Shi-Jie Chen
Simulating Dynamics in RNA-Protein Complexes
/ John Eargle and Zaida Luthey-Schulten
Quantum Chemical Studies of Recurrent Interactions in RNA 3D Motifs
/ Jiří Šponer, Judit E. Šponer and Neocles B. Leontis
Nonredundant 3D Structure Datasets for RNA Knowledge Extraction and Benchmarking
/ Neocles B. Leontis and Craig L. Zirbel
Ions in Molecular Dynamics Simulations of RNA Systems
/ Pascal Auffinger
Modeling RNA Folding Pathways and Intermediates Using Time-Resolved Hydroxyl Radical Footprinting Data
/ Joshua S. Martin, Paul Mitiguy and Alain Laederach
A Top-Down Approach to Determining Global RNA Structures in Solution Using NMR and Small-Angle X-ray Scattering Measurements
/ Yun-Xing Wang, Jinbu Wang and Xiaobing Zuo
RNA Structure Determination by Structural Probing and Mass Spectrometry: MS3D
/ A. E. Hawkins and D. Fabris.