• Media type: Text; E-Article; Electronic Conference Proceeding
  • Title: Fine-Grained Hardness for Edit Distance to a Fixed Sequence
  • Contributor: Abboud, Amir [Author]; Vassilevska Williams, Virginia [Author]
  • Published: Schloss Dagstuhl – Leibniz-Zentrum für Informatik, 2021
  • Language: English
  • DOI: https://doi.org/10.4230/LIPIcs.ICALP.2021.7
  • Keywords: conditional lower bound ; SAT ; edit distance ; sequence alignment ; fine-grained complexity
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  • Description: Nearly all quadratic lower bounds conditioned on the Strong Exponential Time Hypothesis (SETH) start by reducing k-SAT to the Orthogonal Vectors (OV) problem: Given two sets A,B of n binary vectors, decide if there is an orthogonal pair a ∈ A, b ∈ B. In this paper, we give an alternative reduction in which the set A does not depend on the input to k-SAT; thus, the quadratic lower bound for OV holds even if one of the sets is fixed in advance. Using the reductions in the literature from OV to other problems such as computing similarity measures on strings, we get hardness results of a stronger kind: there is a family of sequences {S_n}_{n = 1}^{∞}, |S_n| = n such that computing the Edit Distance between an input sequence X of length n and the (fixed) sequence S_n requires n^{2-o(1)} time under SETH.
  • Access State: Open Access