• Media type: E-Article
  • Title: Backbone and Sidechain Ordering in a small Protein
  • Contributor: Wei, Y. [Author]; Nadler, W. [Author]; Hansmann, U. H. E. [Author]
  • imprint: American Institute of Physics, 2008
  • Published in: The journal of chemical physics 128, 025105 (2008). doi:10.1063/1.2819679
  • Language: English
  • DOI: https://doi.org/10.1063/1.2819679
  • ISSN: 0021-9606
  • Keywords: Peptide Fragments ; Computer Simulation ; Protein Conformation ; Neurofilament Proteins: chemistry ; Neurofilament Proteins ; Models ; villin headpiece subdomain peptide ; Peptide Fragments: chemistry ; Thermodynamics ; Molecular
  • Origination:
  • Footnote: Diese Datenquelle enthält auch Bestandsnachweise, die nicht zu einem Volltext führen.
  • Description: We investigate the relation between backbone and side-chain ordering in a small protein. For this purpose, we have performed multicanonical simulations of the villin headpiece subdomain HP-36, an often used toy model in protein studies. Concepts of circular statistics are introduced to analyze side-chain fluctuations. In contrast to earlier studies on homopolypeptides [Wei et al., J. Phys. Chem. B 111, 4244 (2007)], we do not find collective effects leading to a separate transition. Rather, side-chain ordering is spread over a wide temperature range. Our results indicate a thermal hierarchy of ordering events, with side-chain ordering appearing at temperatures below the helix-coil transition but above the folding transition. We conjecture that this thermal hierarchy reflects an underlying temporal order, and that side-chain ordering facilitates the search for the correct backbone topology.
  • Access State: Open Access