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Media type:
E-Article
Title:
QGene 4.0, an extensible Java QTL-analysis platform
Contributor:
Joehanes, Roby;
Nelson, James C.
imprint:
Oxford University Press (OUP), 2008
Published in:
Bioinformatics, 24 (2008) 23, Seite 2788-2789
Language:
English
DOI:
10.1093/bioinformatics/btn523
ISSN:
1367-4811;
1367-4803
Origination:
Footnote:
Description:
<jats:title>Abstract</jats:title>
<jats:p>Summary: Of many statistical methods developed to date for quantitative trait locus (QTL) analysis, only a limited subset are available in public software allowing their exploration, comparison and practical application by researchers. We have developed QGene 4.0, a plug-in platform that allows execution and comparison of a variety of modern QTL-mapping methods and supports third-party addition of new ones. The software accommodates line-cross mating designs consisting of any arbitrary sequence of selfing, backcrossing, intercrossing and haploid-doubling steps that includes map, population, and trait simulators; and is scriptable.</jats:p>
<jats:p>Availability: Software and documentation are available at http://coding.plantpath.ksu.edu/qgene. Source code is available on request.</jats:p>
<jats:p>Contact: jcn@ksu.edu</jats:p>