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Medientyp:
Buch
Titel:
Metabolic network reconstruction and modeling
:
methods and protocols
Enthält:
Reconstructing high-quality large-scale metabolic models with merlin
/ Oscar Dias, Miguel Rocha, Eugenio Campos Ferreira, and Isabel Rocha
Analyzing and designing cell factories with OptFlux
/ Paulo Vilaca, Paulo Maia, Hugo Giesteira, Isabel Rocha, and Miguel Rocha
MONGOOSE rational arithmetic toolbox
/ Christopher Le and Leonid Chindelevitch
FASTCORE family : for the fast reconstruction of compact context-specific metabolic networks models
/ Maria Pires Pacheco and Thomas Sauter
Reconstruction and analysis of central metabolism in microbes
/ Janaka N. Edirisinghe, Jose P. Faria, Nomi L. Harris, Benjamin H. Allen, and Christopher S. Henry
Using PSAMM for the curation and analysis of genome-scale metabolic models
/ Keith Dufault-Thompson, Jon Lund Steffensen, and Ying Zhang
Integration of comparative genomics with genome-scale metabolic modeling to investigate strain-specific phenotypical differences
/ Jonathan Monk and Emanuele Bosi
Template-assisted metabolic reconstruction and assembly of hybrid bacterial models
/ Tiziano Vignolini, Alessio Mengoni, and Marco Fondi
Integrated host-pathogen metabolic reconstructions
/ Anu Raghunathan and Neema Jamshidi
Metabolic model reconstruction and analysis of an artificial microbial ecosystem
/ Chao Ye, Nan Xu, Xiulai Chen, and Liming Liu
RNA sequencing and analysis in microorganisms for metabolic network reconstruction
/ Eva Pinatel and Clelia Peano
Differential proteomics based on 2D-difference in-gel electrophoresis and tandem mass spectrometry for the elucidation of biological processes in antibiotic-producer bacterial strains
/ Giuseppe Gallo and Andrea Scaloni
Techniques for large-scale bacterial genome manipulation and characterization of the mutants with respect to in silico metabolic reconstructions
/ George C. diCenzo and Turlough M. Finan
Computational prediction of synthetic lethals in genome-scale metabolic models using fast-SL
/ Karthik Raman, Aditya Pratapa, Omkar Mohite, and Shankar Balachandran
Coupling fluxes, enzymes, and regulation in genome-scale metabolic models
/ Paul A. Jensen
Dynamic flux balance analysis using DFBAlab
/ Jose Alberto Gomez and Paul I. Barton
Designing optimized production hosts by metabolic modeling
/ Christian Jungreuthmayer, Matthias P. Gerstl, David A. Pena Navarro, Michael Hanscho, David E. Ruckerbauer, and J€urgen Zanghellini
Optimization of multi-omic genome-scale models : methodologies, hands-on tutorial, and perspectives
/ Supreeta Vijayakumar, Max Conway, Pietro Li o, and Claudio Angione