• Medientyp: Elektronischer Konferenzbericht; Sonstige Veröffentlichung; E-Artikel
  • Titel: On the Monotonicity of the String Correction Factor for Words with Mismatches
  • Beteiligte: Apostolico, Alberto [VerfasserIn]; Pizzi, Cinzia [VerfasserIn]
  • Erschienen: Schloss Dagstuhl – Leibniz-Zentrum für Informatik, 2006
  • Sprache: Englisch
  • DOI: https://doi.org/10.4230/DagSemProc.06201.5
  • Schlagwörter: Pattern discovery ; Motif ; Correction Factor ; Monotone score ; Over-represented word
  • Entstehung:
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  • Beschreibung: The string correction factor is the term by which the probability of a word $w$ needs to be multiplied in order to account for character changes or ``errors'' occurring in at most $k$ arbitrary positions in that word. The behavior of this factor, as a function of $k$ and of the word length, has implications on the number of candidates that need to be considered and weighted when looking for subwords of a sequence that present unusually recurrent replicas within some bounded number of mismatches. Specifically, it is seen that over intervals of mono- or bi-tonicity for the correction factor, only some of the candidates need be considered. This mitigates the computation and leads to tables of over-represented words that are more compact to represent and inspect. In recent work, expectation and score monotonicity has been established for a number of cases of interest, under {em i.i.d.} probabilistic assumptions. The present paper reviews the cases of bi-tonic behavior for the correction factor, concentrating on the instance in which the question is still open.
  • Zugangsstatus: Freier Zugang