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Medientyp:
E-Artikel
Titel:
GHap: an R package for genome-wide haplotyping
Beteiligte:
Utsunomiya, Yuri T.;
Milanesi, Marco;
Utsunomiya, Adam T. H.;
Ajmone-Marsan, Paolo;
Garcia, José F.
Erschienen:
Oxford University Press (OUP), 2016
Erschienen in:
Bioinformatics, 32 (2016) 18, Seite 2861-2862
Sprache:
Englisch
DOI:
10.1093/bioinformatics/btw356
ISSN:
1367-4811;
1367-4803
Entstehung:
Anmerkungen:
Beschreibung:
Abstract The GHap R package was designed to call haplotypes from phased marker data. Given user-defined haplotype blocks (HapBlock), the package identifies the different haplotype alleles (HapAllele) present in the data and scores sample haplotype allele genotypes (HapGenotype) based on HapAllele dose (i.e. 0, 1 or 2 copies). The output is not only useful for analyses that can handle multi-allelic markers, but is also conveniently formatted for existing pipelines intended for bi-allelic markers. Availability and implementation: https://cran.r-project.org/package=GHap Contact: ytutsunomiya@gmail.com Supplementary information: Supplementary data are available at Bioinformatics online.